Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq4204 461 9e-125 seq3130 322 5e-83 seq3676 264 1e-65 seq4136 178 1e-39 seq203 116 4e-21 seq4428 111 2e-19 seq238 82.4 9e-11 >seq4204 Length=279751 Score = 461 bits (510), Expect = 9e-125 Identities = 689/976 (71%), Gaps = 19/976 (2%) Strand=Plus/Minus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 216739 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 216681 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | ||||| || || || ||| | || |||||| | || |||| ||| || Sbjct 216680 TACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGTAGA 216621 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | || || ||| | ||||||| | ||||| ||||| || ||||| Sbjct 216620 TATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTATCTC 216561 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 |||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 216560 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 216501 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || || | || |||||||| || || || || ||||| || || || || | ||||| Sbjct 216500 TGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTT 216441 Query 72543 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 72602 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 216440 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 216381 Query 72603 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 72662 | | |||||||| ||| ||||| | ||| ||| | || ||| | Sbjct 216380 GCGTCCTTGGATTGCTGTTGCATATTTAGCTACTG---------------CTGTTTTCTT 216336 Query 72663 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 72722 | ||||| | ||||| || ||||||||||||||||| |||| || || ||||| Sbjct 216335 GATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 216276 Query 72723 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 72782 |||||||| ||| | || ||||| ||||| |||||||| || ||||| || || || || Sbjct 216275 TTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACAT 216216 Query 72783 GGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGT 72842 | ||||||||| ||| | ||||| ||| || |||||||| ||||| ||||| | || Sbjct 216215 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 216156 Query 72843 TACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTT 72902 || || | | ||||| || || || || || || | || | || || | || Sbjct 216155 AACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAGATT 216096 Query 72903 CGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAAT 72962 || ||||| ||||| || ||||| ||||| || |||||||| ||||| || ||||||| Sbjct 216095 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTAAT 216036 Query 72963 CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCC 73022 |||||| ||||| || |||||||||||||| |||||||||||| | |||| | || Sbjct 216035 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 215976 Query 73023 TGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGG 73082 |||||| | | ||||| || | | ||||| |||| ||||| |||||||| ||||| Sbjct 215975 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 215916 Query 73083 ATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAG 73141 |||||| ||||||||||| || | ||| || || || || | || |||| | Sbjct 215915 ATTCAATTTCAACCAATCTGTACTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTG 215857 Query 73142 ATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACT 73201 || | | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||||| Sbjct 215856 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 215797 Query 73202 TCCCACTAGACCTAGC 73217 |||| ||||||||||| Sbjct 215796 TCCCTCTAGACCTAGC 215781 >seq3130 Length=1765 Score = 322 bits (356), Expect = 5e-83 Identities = 488/691 (71%), Gaps = 4/691 (1%) Strand=Plus/Minus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-A 72313 ||| || || || | ||| | || ||||| ||||| || |||||||| | ||| | | Sbjct 1343 CACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGA 1285 Query 72314 CTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAA 72373 |||| || || || ||| | || |||||||| || |||||||| ||||| || || | Sbjct 1284 CTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTA 1225 Query 72374 TCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAG 72433 | | || || ||| | |||||||| | ||||| ||||| || ||||||||||| | Sbjct 1224 TTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTA 1165 Query 72434 TTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGG 72493 |||| |||| || || ||||| ||||| || || || |||||||| || || | | Sbjct 1164 TTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 1105 Query 72494 ACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAA 72553 | |||||||| || || || || ||||| || || || || | |||||| | |||| Sbjct 1104 ATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 1045 Query 72554 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 72613 | || || |||||| | |||||||||| | | | || || ||| | ||||||| Sbjct 1044 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 985 Query 72614 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 72673 | ||| ||||| ||||| ||||| | || || ||| || ||| | | ||||| Sbjct 984 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTA 925 Query 72674 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 72733 | ||||| || ||||||||||||||||| |||| || || ||||| |||||||| | Sbjct 924 TTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 865 Query 72734 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 72793 || | || ||||| ||||| |||||||| || ||||| || || || ||| |||||||| Sbjct 864 TGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 805 Query 72794 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTC 72853 | ||| | ||||||||| || |||||||| || || ||||| | || || || | Sbjct 804 CTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTT 745 Query 72854 TAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAG 72913 | ||||| || || || || || || | || | || || | || || ||||| | Sbjct 744 TGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGG 685 Query 72914 AAGAAACATATAACATTGTTGCTGCTCATGG 72944 |||| || ||| ||||| || |||||||| Sbjct 684 AAGAGAC--TTAATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 264 bits (292), Expect = 1e-65 Identities = 410/583 (70%), Gaps = 7/583 (1%) Strand=Plus/Plus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCT-AA 72313 ||| || || || | ||| | || |||| | ||| || |||||||| | ||| | || Sbjct 288209 CACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCC-TACCTTATTAA 288267 Query 72314 CTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAA 72373 |||| || || || ||| | || |||||||| || |||||||| ||||| || || | Sbjct 288268 CTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTA 288327 Query 72374 TCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAG 72433 | | || || ||| | |||||| | ||||| ||||| || ||||||||||| | Sbjct 288328 TTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTA 288387 Query 72434 TTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGG 72493 |||| |||| || || ||||| ||||| || || || |||||||| || || | | Sbjct 288388 TTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 288447 Query 72494 ACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAA 72553 | |||||||| || || || || ||||| || || || || | |||||| | |||| Sbjct 288448 ATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 288507 Query 72554 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 72613 | || || |||||| | |||||||||| | | | || || ||| | ||||||| Sbjct 288508 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 288567 Query 72614 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 72673 | ||| ||||| ||||| ||||| | | || ||| || ||| | | ||||| Sbjct 288568 TTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTA 288627 Query 72674 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 72733 | ||||| || ||||||||||||||||| |||| || || ||||| |||||||| | Sbjct 288628 TTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 288687 Query 72734 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 72793 || | || ||||| | ||| |||||||| || ||||| || || | ||| |||||||| Sbjct 288688 TGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAG 288747 Query 72794 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 72836 | |||| || ||| || |||||||| ||||| ||||| Sbjct 288748 C-----TGTTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 178 bits (196), Expect = 1e-39 Identities = 169/215 (79%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 72897 TAAG-TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTA 72955 |||| || || ||||| ||||| || ||||| ||||| || |||||||| ||||| || Sbjct 3278 TAAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 3219 Query 72956 GATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 73015 ||||||||||||| ||||| || |||||||||||||| |||||||||||| | |||| Sbjct 3218 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 3159 Query 73016 TATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACC 73075 | |||||||| | | ||||| || | | ||||| |||| ||||| ||||||| Sbjct 3158 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 3099 Query 73076 TTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 73110 | ||||||||||| ||||||||||| || || ||| Sbjct 3098 TAAACGGATTCAATTTCAACCAATCTGTAGTTGAT 3064 >seq203 Length=971741 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 73023 TGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGG 73082 |||||| | | ||||| || | | ||||| |||| ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 73083 ATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAG 73141 |||||| ||||||||||| || || ||| || || | | | || | | |||| | Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATA-CTTGGGCTG 777940 Query 73142 ATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACT 73201 || | | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||||| Sbjct 777941 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 778000 Query 73202 TCCCACTAGACCTAGC 73217 |||| ||||||||||| Sbjct 778001 TCCCTCTAGACCTAGC 778016 >seq4428 Length=185154 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 72693 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGA 72752 |||||||||||| ||| || || ||||| |||||||| ||| | || ||||| ||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 72753 ACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAG 72812 ||||||| || ||||| | || || ||| ||||||||| ||| | ||||| ||| Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 72813 TCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGA 72872 || |||||||| |||| ||||| | || || || | | ||||| || || || || Sbjct 19579 CCTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGA 19520 Query 72873 GAACGA 72878 || || Sbjct 19519 AAATGA 19514 >seq238 Length=82349 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 73408 CATCGGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTT 73467 ||| ||||||||||| || || || || ||||||||||| | || | ||||||||||| Sbjct 49496 CATAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTT 49437 Query 73468 CGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGA 73527 ||| |||||||| || || || ||||| || ||||| | || || ||| | || Sbjct 49436 TACAGGGACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGA 49377 Query 73528 GGGAGCAAATTTTTTAACTGCAGCA 73552 || ||||| ||||| | |||| Sbjct 49376 AGGTTGCAATTTCTTAACCGTAGCA 49352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572841218319760