Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq4119 98.7 1e-15 >seq4119 Length=325369 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 194197 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 194255 ||||||| ||| | || || ||| || | |||||| || ||||| |||| || || Sbjct 168390 GATGGTTTGAGATTTGTCAAGGTTAGAATGCGATCAGTT-CGCATACCACAAATTGGAGA 168332 Query 194256 TAAATTTTGTTCG-GGAATGGCTCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 194314 ||| ||| | || |||| ||| ||||||||| ||| |||| |||| ||||||| | Sbjct 168331 TAAGTTTAGCAGTAGGCATGG-TCAGAAAGGAACTGTTGGAATGACTTATACACAAGAGG 168273 Query 194315 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATCAATCCAAATTGTATTC 194374 | ||||| | || | | ||| || ||| ||||||||| | |||||| || ||||| Sbjct 168272 ACATGCCGTGGACTATTGAAGGCATTACACCTGATATTATTGTGAATCCACATGCTATTC 168213 Query 194375 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 194421 | ||| | ||||| ||| ||| | |||| | ||||||||||| Sbjct 168212 CATCCCGTATGACTATTGGTCAGCTGATTGAGTGTATTATGGGTAAA 168166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632453848525360