Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2778 82.4 6e-11 seq1848 82.4 6e-11 >seq2778 Length=1391004 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||| | || ||||| ||||||| | || ||| | Sbjct 174000 ATGCAGATCTTTGTCAAGACTCTCACAGGCAAGACCATTATTCTGGAGGTTGAGAGCTCC 173941 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| ||||| | ||| || || Sbjct 173940 GACACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 173881 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||||||||||| | | || | || || |||||| Sbjct 173880 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTGCCGACTACAAC 173821 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| ||||| ||||| | ||| ||||| Sbjct 173820 ATTCAGAAAGAGTCTACCCTCCACCTGGTG 173791 >seq1848 Length=11040 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||||| || ||||| || || ||| | || |||| || | Sbjct 6090 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 6149 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||| ||||| || ||| | ||| ||| || Sbjct 6150 GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 6209 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||||| | | || |||| || |||||| Sbjct 6210 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 6269 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || ||||| || | ||| ||||| Sbjct 6270 ATCCAGAAGGAATCCACTCTTCACCTGGTG 6299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412818847525346