Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4493 91.5 1e-13 seq2778 89.7 4e-13 seq2624 86.0 5e-12 seq1848 86.0 5e-12 >seq4493 Length=164055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || ||||| || || ||| | || |||| | Sbjct 95520 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCCTCT 95579 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| |||||| Sbjct 95580 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 95639 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| || || ||||||||||||| || || | || ||||||||| Sbjct 95640 CAGCGTCTTATCTTTGCTGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCTGACTACAAC 95699 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 95700 ATCCAGAAGGAGTCCACCCTTCACCTTGTG 95729 >seq2778 Length=1391004 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | |||||||| ||||||| | || ||| ||| Sbjct 174000 ATGCAGATCTTTGTCAAGACTCTCACAGGCAAGACCATTATTCTGGAGGTTGAGAGCTC- 173942 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| || || ||||| | ||| || || Sbjct 173941 CGACACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCA 173882 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||||||||| | | || | || |||||||| Sbjct 173881 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTGCCGACTACAA 173822 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| || |||||||| | ||| ||||| Sbjct 173821 CATTCAGAAAGAGTCTACCCTCCACCTGGTG 173791 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||||||||| ||| | || |||||||| |||||| | || ||| ||| Sbjct 174229 AATGCAGATTTTTGTCAAGACTCTCACTGGCAAAACTATTACCCTGGAGGTTGAGAGCTC 174170 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || || ||||| || || || ||| | ||| | || | Sbjct 174169 T-GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCTAGACC 174111 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||| | || || | || || || ||||| ||||| | | || | || ||||||| Sbjct 174110 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGTAGGACCCTTGCTGACTACA 174051 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| || |||||||| || | ||| ||||| Sbjct 174050 ACATCCAGAAGGAGTCGACCCTCCACCTGGTG 174019 >seq2624 Length=565299 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| | || ||| | Sbjct 25537 ATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCA 25478 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 25477 GACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 25418 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || ||||| ||||||| | || |||| ||||||||| Sbjct 25417 CAGCGTCTCATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCTGACTACAAC 25358 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || || |||||||| || | ||| ||||| |||| Sbjct 25357 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGAG 25323 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| |||| ||| | Sbjct 26221 ATGCAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 26162 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| || ||| Sbjct 26161 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 26102 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| || || ||||||||||| | | || |||||||||||||| Sbjct 26101 CAGCGTCTGATTTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 26042 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 26041 ATCCAGAAGGAGTCCACCCTCCACCTTGTG 26012 >seq1848 Length=11040 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || ||||| || ||||| || || ||| | || |||| || | Sbjct 6090 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 6149 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 6150 GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 6209 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||| | | || |||| ||||||||| Sbjct 6210 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 6269 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||| || || | ||| ||||| Sbjct 6270 ATCCAGAAGGAATCCACTCTTCACCTGGTG 6299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398854817151658