Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4493 116 3e-21 seq1848 113 3e-20 seq2778 100 2e-16 seq1692 100 2e-16 seq348 100 2e-16 seq1042 82.4 6e-11 >seq4493 Length=164055 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | || || || | |||||| || || || || || ||||| || || ||| Sbjct 95974 CCTCCCCTGAGGCGGAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 95915 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | || | | ||||| ||||| ||| Sbjct 95914 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGA 95855 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || ||||| | || | ||||||||| || || Sbjct 95854 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCACC 95795 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| |||||||| | || || || || |||||||| Sbjct 95794 TCGAGGGTGATAGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 95748 >seq1848 Length=11040 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | || || || | || || || || || || || ||||| || || || Sbjct 5860 CCTCCCCTGAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCG 5801 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| ||| | ||||| | |||||| ||||| ||| Sbjct 5800 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAGCGTTGCTGGTCCGGGGGA 5741 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || ||||| | || | ||||| ||| || || Sbjct 5740 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 5681 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||| ||||| || | || || || || |||||||| Sbjct 5680 TCAAGAGTGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 5634 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | || || || | || || ||||| || || || ||||| || || || Sbjct 5632 CCTCCCCTGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 5573 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||||||||| | || | | ||||| || || ||| Sbjct 5572 AGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGGA 5513 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| || || || | || |||||| | || | |||||||| || || Sbjct 5512 ATACCCTCCTTATCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCAGAGGACTCCACC 5453 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| ||||| || || || || ||||| |||||||| Sbjct 5452 TCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 5406 >seq2778 Length=1391004 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | || ||||||| || || || || || || || ||||| || || ||| Sbjct 174002 CCACCCCTGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 174061 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | | ||| || || || |||||||| | || | | ||||| || | ||| Sbjct 174062 AGGGTCCTACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTAGGGGA 174121 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || ||| | || | |||||||| || || Sbjct 174122 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGAGCTCTCAACC 174181 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || |||||||||||||| | || || ||||| ||||||||| Sbjct 174182 TCCAGGGTAATAGTTTTGCCAGTGAGAGTCTTGACAAAAATCTGCATT 174229 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | || || || | || || ||||| || || || ||||| || || ||| Sbjct 175281 CCTCCCCTGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 175340 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || |||||||| | || | | ||||||||||| || Sbjct 175341 AGTGTGCGTCCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 175400 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | || || || || || Sbjct 175401 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCAACC 175460 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || |||||||| | ||| || ||||| |||||||| Sbjct 175461 TCGAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 175507 >seq1692 Length=674084 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| || || || ||||| |||||||| ||||| || Sbjct 587135 TCCACCCCTGAGCCTCAGGACCAAATGGAGTGTTGACTCTTTCTGAATGTTGTAATCAGC 587194 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || | ||| || || ||| | |||| ||||||||||| || || Sbjct 587195 TAATGTGCGCCCATCTTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGG 587254 Query 29679 AATACCCTCTTTGTCTTG 29696 ||| ||||||||||| || Sbjct 587255 AATGCCCTCTTTGTCCTG 587272 >seq348 Length=941607 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| |||||||| || ||||| ||||| |||||||| ||||| || | ||| | ||| Sbjct 470058 CAGGACCAAATGGAGAGTGGACTCTTTCTGAATGTTGTAATCAGCTAATGTGTGCCCATC 469999 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||| || || ||| | |||| ||||||||||| || ||||||||||||||||| Sbjct 469998 TTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGGAATACCCTCTTTGTC 469939 Query 29694 TTG 29696 || Sbjct 469938 CTG 469936 >seq1042 Length=22717 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| || || || || |||||||| || || || | ||||| ||| Sbjct 10584 AGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCCAATGTGCGTCCATCC 10525 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||||||||| ||||||| | || ||||| || ||||| || || ||||| Sbjct 10524 TCCAACTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATCCCTTCCTTGTCC 10465 Query 29695 TGT 29697 ||| Sbjct 10464 TGT 10462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385197969847602