Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq4204 547 7e-151 seq3130 401 7e-107 seq3676 318 6e-82 seq4136 152 6e-32 seq203 152 6e-32 seq4428 114 1e-20 seq2035 100 3e-16 >seq4204 Length=279751 Score = 547 bits (606), Expect = 7e-151 Identities = 717/989 (72%), Gaps = 19/989 (2%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| | ||| ||||| |||| | |||||| | || | || ||||||||||| | Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | |||||| |||| || ||| | || ||| | |||| || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCC 216630 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 || || ||||| || |||||||| || || ||| || ||||| | | ||||| ||||| Sbjct 216629 TCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAA 216570 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 || ||||||||||| || ||||| |||| || ||||| | ||||| ||||| || Sbjct 216569 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 216510 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 |||||||| ||||| ||||||||||| | ||||| || || |||| | || | || Sbjct 216509 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 216450 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | |||||| | | || | | |||||||| |||||||||||||| || ||| Sbjct 216449 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 216390 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 | | |||||||| || ||||| |||||| || | | ||| |||| Sbjct 216389 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT---------TAGCTACTGCT----- 216344 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 || ||| | | |||||| | |||||||| |||||| |||| ||||||| | || || Sbjct 216343 -GTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 216285 Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589 ||||||||||| |||| |||| | || ||||||||||||||||| || ||||||||||| Sbjct 216284 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCC 216225 Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 || |||||| | || || ||||| |||||||| || || | ||| ||||||||| || Sbjct 216224 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 216165 Query 157650 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATG 157708 | || || || | | ||| || | ||||| ||||||| || || || | | Sbjct 216164 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 157709 GTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCG 157768 |||||| || |||||||| |||||||| || || || || || || || |||||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 157769 GTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCG 157828 | || | ||||||||||| ||| || |||||| | | | ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 157829 CCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 157888 | || |||||||| || || || ||||||||||| | || | || || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 157889 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 157948 |||| ||||| ||||| |||||||| || | |||||| | || ||||| || | || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 157949 CCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158008 | ||||| ||| || | ||||| ||| ||||||||||||||| ||||| || ||||| | Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 158009 CACACAACTTCCCACTGGATCTTGCTGCT 158037 | ||||||||||| || || || |||||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 401 bits (444), Expect = 7e-107 Identities = 515/704 (73%), Gaps = 6/704 (1%) Strand=Plus/Minus Query 157061 GGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCAA 157120 || ||||| |||| | |||||| | || | || ||||||||||| | ||||| || | Sbjct 1353 GGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTA 1294 Query 157121 CATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGAT 157179 | || | | |||||| |||| || ||| | || ||| | ||||| ||||| || ||| Sbjct 1293 CCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGAT 1235 Query 157180 ATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCT 157239 || || |||||||| || || ||| |||||||| | | ||||| ||||| || |||||| Sbjct 1234 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 1175 Query 157240 GGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCA 157299 ||||| || ||||| |||| || ||||| | ||||| ||||| || |||||||| Sbjct 1174 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 1115 Query 157300 GCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTC 157359 ||||| ||||||||||| | ||||| || || |||| | || | || | |||||| Sbjct 1114 GCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTC 1055 Query 157360 CTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATG 157419 | | || | | |||||||| |||||||||||||| || |||| | |||||| Sbjct 1054 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 995 Query 157420 CGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTC 157479 || || ||||| |||||| || || || || || || ||||| | ||| || ||| | Sbjct 994 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 935 Query 157480 GTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACT 157539 | |||||| | |||||||| |||||| |||| ||||||| | || || ||||||||| Sbjct 934 ATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 875 Query 157540 TTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATG 157599 || |||| |||| | || ||||||||||||||||| || ||||||||||| || |||||| Sbjct 874 TTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATG 815 Query 157600 CTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTT 157659 | || || ||||| ||||||||||| || | ||| |||||| || || | || Sbjct 814 TTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTA 755 Query 157660 ACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTT 157718 || | || | ||| || | ||||| ||||||| || || || ||||||||| || Sbjct 754 ACCT-CTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATT 696 Query 157719 CGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTT 157762 |||||||| |||||||| | || || || || || || |||| Sbjct 695 TGGTCAAGAGGAAGAGACTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 318 bits (352), Expect = 6e-82 Identities = 432/600 (72%), Gaps = 7/600 (1%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| | ||| ||| | |||| | |||||| | || | || |||| || ||| | Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | |||||| |||| || ||| | || ||| | ||||| || Sbjct 288249 ATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCC 288307 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || ||||| || |||||||| || || ||| | |||| | | ||||| ||||| Sbjct 288308 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAA 288367 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 || ||||||||||| || ||||| |||| || ||||| | ||||| ||||| || Sbjct 288368 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 288427 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 |||||||| ||||| ||||||||||| | ||||| || || |||| | || | || Sbjct 288428 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 288487 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | |||||| | | || | | |||||||| |||||||||||||| || ||| Sbjct 288488 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 288547 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 | | |||||||| || ||||| |||||| || || || || || || | ||| | ||| Sbjct 288548 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 288607 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 || ||| | | |||||| | |||||||| |||||| |||| ||||||| | || || Sbjct 288608 TGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 288667 Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589 ||||||||||| |||| |||| | || ||||||| ||||||||| || ||||||||||| Sbjct 288668 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCC 288727 Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 || | |||| | || || |||| || || || || | ||| ||||||||| || Sbjct 288728 ATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATGG 288782 >seq4136 Length=310402 Score = 152 bits (168), Expect = 6e-32 Identities = 185/252 (73%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 157717 TTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTG 157776 || |||||||| |||||||| || || || || || || || |||||||| || || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 157777 ATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGG 157836 ||||||||||| ||| || |||||| | | | ||||||||| | || || ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 157837 CCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAAC 157896 ||||| || || || ||||||||||| | || | || || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 157897 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCA 157956 || ||||| |||||||| || | ||||| | || ||||| || | || || ||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 157957 GATGTCCTGAAC 157968 ||| || | ||| Sbjct 3033 GATATCATCAAC 3022 >seq203 Length=971741 Score = 152 bits (168), Expect = 6e-32 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 157839 TGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGG 157898 ||| || || || ||||||||||| | || | || || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 157899 TTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGA 157958 ||||| |||||||| || | ||||| | || ||||| || | || || ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 157959 TGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTT 158018 | || | ||||| ||| ||||||||||||||| ||||| || ||||| || |||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 158019 CCCACTGGATCTTGCTGCT 158037 ||| || || || |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq4428 Length=185154 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 157510 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAG 157569 |||| ||||||| | | || ||||||||||| |||| |||| | || |||||||||||| Sbjct 19698 GATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 19639 Query 157570 CACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCT 157629 |||| || ||||||||| | || |||||| | || || ||||| |||||||| || || Sbjct 19638 TACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 19579 Query 157630 TTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGA 157688 | ||| |||| |||| || | || || | || | ||| || | ||||| ||||| Sbjct 19578 CTATTCAGTGCTTTGCATGGTTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACTGA 19520 Query 157689 AA 157690 || Sbjct 19519 AA 19518 >seq2035 Length=9416 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 159504 GGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATG 159563 ||||| | |||| || || || ||| | ||||||||||| | ||||| || || | Sbjct 3852 GGCATAACTTTTTTCAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACC 3793 Query 159564 GGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 159623 ||| |||||| ||||||| | | || || ||||| || || ||||| || || Sbjct 3792 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGAC 3733 Query 159624 TTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAG 159683 || || | || ||| | ||||| |||||||| |||||||| || ||||||||||| Sbjct 3732 TTTGTTTCCTAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 3673 Query 159684 AACATTCTTCTGAATGAAGG 159703 || ||| || | ||||| || Sbjct 3672 AATATTGTTTTAAATGAGGG 3653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545242778409760