Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq4204 489 2e-133 seq3130 365 5e-96 seq3676 289 3e-73 seq4136 158 1e-33 seq4428 122 1e-22 seq2035 120 4e-22 seq337 100 3e-16 seq3543 82.4 9e-11 >seq4204 Length=279751 Score = 489 bits (542), Expect = 2e-133 Identities = 703/989 (71%), Gaps = 20/989 (2%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| || || |||||||| || | || || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCC 216630 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 | || || || || || || ||||| || || || |||| | | ||||| ||||| Sbjct 216629 TCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAA 216570 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 216569 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 216510 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 216509 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 216450 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | |||||||| |||||||||||||| | ||| Sbjct 216449 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 216390 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| |||||||| || ||||| ||||||||| | || ||| || Sbjct 216389 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTACTGCTGT------------ 216342 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 ||||| | | |||||| | |||||||| ||||| |||| ||||||| | || | Sbjct 216341 ----TTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 | ||||||||||| |||| ||| |||||||||| ||||| ||||| ||||||||||| | Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | || |||||| | ||||| ||||| |||||||| || || || ||| ||||||||||| Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | | || || ||| | || | || || || |||| ||| || || | | Sbjct 216165 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 |||||| || || ||||| ||||| || ||||| || || || || ||||||||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 | || || |||||||||||||| || |||||||| ||||| | ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 | || ||||||||||| || || |||||||| || | ||| | || ||||| || | Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 |||| || |||||||| |||||||| || | || || | ||||| || || | || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 178456 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATA 178515 | ||||| || | |||||||||| ||| || |||||||| ||||||||| | ||| Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT- 215807 Query 178516 GCACATAACTTCCCGCTTGATCTTGCAGC 178544 || || |||||||| || || || || || Sbjct 215806 GCTCACAACTTCCCTCTAGACCTAGCTGC 215778 >seq3130 Length=1765 Score = 365 bits (404), Expect = 5e-96 Identities = 507/704 (72%), Gaps = 6/704 (1%) Strand=Plus/Minus Query 177568 GGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAA 177627 || ||||| ||| | ||||| || || |||| |||||||| || ||||||| || | Sbjct 1353 GGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTA 1294 Query 177628 CTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGAC 177686 | | ||| | |||||| |||| || || |||||||| |||| || || || || || Sbjct 1293 CCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGAT 1235 Query 177687 ATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 177746 || || || || ||||| || || ||||||| | | ||||| ||||| || |||||| Sbjct 1234 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 1175 Query 177747 GGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCC 177806 ||||| || | || |||| || || || | ||||| || || || |||||||| Sbjct 1174 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 1115 Query 177807 GCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTC 177866 ||||| ||||||||||| | || || || || |||| | || | || | |||||| Sbjct 1114 GCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTC 1055 Query 177867 CTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATG 177926 | | || | | |||||||| |||||||||||||| | |||||| |||||| Sbjct 1054 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 995 Query 177927 CGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTA 177986 || || ||||| ||||||||| || || ||||||||||| || | || || ||||| Sbjct 994 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTT 936 Query 177987 G-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTAC 178045 | | |||||| | |||||||| ||||| |||| ||||||| | || || |||||||| Sbjct 935 GATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 876 Query 178046 TTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACAT 178105 ||| |||| ||| |||||||||| ||||| ||||| ||||||||||| || || ||||| Sbjct 875 TTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACAT 816 Query 178106 GCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGT 178165 | | ||||| ||||| ||||||||||| || || ||| |||||| ||||| | || Sbjct 815 GTTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGT 756 Query 178166 TACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTT 178225 || ||| | || | || || || |||| ||| || || ||||||||| || Sbjct 755 AACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATT 696 Query 178226 CGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTT 178269 || ||||| ||||| || ||| || || || || ||||||| Sbjct 695 TGGTCAAGAGGAAGAGAC--TTAATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 289 bits (320), Expect = 3e-73 Identities = 428/601 (71%), Gaps = 9/601 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | ||| ||| | ||| | ||||| || || |||| |||| || || || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | || | |||||| |||| || || |||||||| |||| || || Sbjct 288249 ATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCC 288307 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || ||||| || || | ||| | | ||||| ||||| Sbjct 288308 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAA 288367 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 288368 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 288427 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 288428 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 288487 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | |||||||| |||||||||||||| | ||| Sbjct 288488 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 288547 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| |||||||| || ||||| ||||||||| || || |||||||||| || | || Sbjct 288548 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 288607 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 || ||||| | | |||||| | |||||||| ||||| |||| ||||||| | || | Sbjct 288608 TGT-TTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 288666 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 | ||||||||||| |||| ||| |||||||||| | ||| ||||| ||||||||||| | Sbjct 288667 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATC 288726 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | || | |||| | ||||| |||| || || || || || ||| ||||||||||| Sbjct 288727 CATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATG 288781 Query 178156 G 178156 | Sbjct 288782 G 288782 >seq4136 Length=310402 Score = 158 bits (174), Expect = 1e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 178224 TTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTG 178283 || || ||||| ||||| || ||||| || || || || ||||||||||| || || || Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 178284 ATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGG 178343 |||||||||||||| || |||||||| ||||| | ||||||||| | || || ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 178344 CCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAAT 178403 |||||||| || || |||||||| || | ||| | || ||||| || ||||| || Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 178404 GGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCA 178463 |||||||| |||||||| || | | || | ||||| || || | || || ||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 178464 GA 178465 || Sbjct 3033 GA 3032 >seq4428 Length=185154 Score = 122 bits (134), Expect = 1e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 178017 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 178076 |||| ||||||| | | || ||||||||||| |||| ||| |||||||||| ||||| Sbjct 19698 GATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 19639 Query 178077 CACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 178136 |||| ||||||||||| | || |||||| | ||||| ||||| |||||||| || || Sbjct 19638 TACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 19579 Query 178137 CTTTTCTCTGCTATGCATGG 178156 || ||| |||| ||||||| Sbjct 19578 CTATTCAGTGCTTTGCATGG 19559 >seq2035 Length=9416 Score = 120 bits (132), Expect = 4e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 179682 CAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTC 179741 |||||| |||||||| | ||||||| ||| ||||| || |||| ||| | ||| | Sbjct 3838 CAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 3779 Query 179742 TTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGA 179801 | |||||||| | | || |||||||| || || ||||| ||||| ||||| | || Sbjct 3778 TGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGA 3719 Query 179802 GATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAA 179861 ||| | ||||| ||||||||||| || ||||| ||||| || || || ||| || | || Sbjct 3718 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTTTTAAA 3659 Query 179862 TGAAGG 179867 ||| || Sbjct 3658 TGAGGG 3653 >seq337 Length=959560 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||| |||||||| || || || | || ||||||||||| || |||||||| Sbjct 480441 TACATCCTAGATGCTGCCGAGACCGCTGGAGTGGAGCTTCCCTACTCTTGCCGTGCTGGA 480500 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| || ||||||||||| || | | | ||| || || |||||||| || || Sbjct 480501 GCATGCTCCACCTGTGCTGGCAAGATTGAGGCAGGCACGGTCGATCAGTCGGATGGATCA 480560 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 || |||||||||| || | || ||| | | |||| ||||| | ||||||| Sbjct 480561 TTTCTTGATGATGCGCAGCAGGAAGAAGGCTACGTGCTGACATGCGTGTCCTACCCCAAG 480620 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGATGG 138765 || || ||| | || | ||| | || || | || || |||||| || Sbjct 480621 TCGGACTGTGTCATCCATACTCACAAGGAAGGAGACCTTTACTGAGGG 480668 >seq3543 Length=1405827 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 ||||| |||||||| ||||| || || | || || |||||||| || |||||||| Sbjct 1101045 TACATTCTTGATGCCGCTGAGACCGCCGGAGTGGAGCTGCCCTACTCTTGCCGTGCTGGA 1101104 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| || ||||||||||| || | | | || |||| || ||||| || || Sbjct 1101105 GCATGCTCCACCTGTGCTGGCAAGATTGAGGCCGGTGCTGTTGACCAGTCGGATGGATCA 1101164 Query 138658 TTCCTTGATGATG 138670 ||||||||||||| Sbjct 1101165 TTCCTTGATGATG 1101177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605632964661520