Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq4119 89.7 7e-13 >seq4119 Length=325369 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 201567 CGTATACCAGAAATTGGAGATAAATTTTGTTCT-GGAATGGCCCAAAAAGGAACTTGTGG 201625 || |||||| ||||||||||||| ||| | | || |||| | | ||||||||| ||| Sbjct 168351 CGCATACCACAAATTGGAGATAAGTTTAGCAGTAGGCATGGTC-AGAAAGGAACTGTTGG 168293 Query 201626 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCG--GGTATGACCCCGGATATT 201683 |||| |||| ||||||| || ||||||| || || | || || || || |||||| Sbjct 168292 AATGACTTATACACAAGAGGACATGCCGTGGACT--ATTGAAGGCATTACACCTGATATT 168235 Query 201684 ATAATCAATCCAAATTGTATACCATCAAGAATGACCATAAATCAAATAATTGCAACTGTT 201743 || | |||||| || ||| ||||| | ||||| || ||| | |||| | || Sbjct 168234 ATTGTGAATCCACATGCTATTCCATCCCGTATGACTATTGGTCAGCTGATTGAGTGTATT 168175 Query 201744 ATGGGTAAA 201752 ||||||||| Sbjct 168174 ATGGGTAAA 168166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655242960298000