Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq4119 93.3 5e-14 >seq4119 Length=325369 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 192954 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 193012 ||||||| ||| | || || ||| || | |||||| || ||||| |||| || || Sbjct 168390 GATGGTTTGAGATTTGTCAAGGTTAGAATGCGATCAGTT-CGCATACCACAAATTGGAGA 168332 Query 193013 TAAATTTTGTTCG-GGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 193071 ||| ||| | || |||| | | ||||||||| ||| |||| |||| ||||||| | Sbjct 168331 TAAGTTTAGCAGTAGGCATGGTC-AGAAAGGAACTGTTGGAATGACTTATACACAAGAGG 168273 Query 193072 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTC 193131 | ||||| | || | | ||| || ||| ||||||||| | |||||| || ||||| Sbjct 168272 ACATGCCGTGGACTATTGAAGGCATTACACCTGATATTATTGTGAATCCACATGCTATTC 168213 Query 193132 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 193178 | ||| | ||||| ||| ||| | |||| | ||||||||||| Sbjct 168212 CATCCCGTATGACTATTGGTCAGCTGATTGAGTGTATTATGGGTAAA 168166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628495672273920