Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4069 141 7e-28 seq4137 134 1e-25 seq1459 123 2e-22 seq4468 100 2e-15 seq4234 87.8 1e-11 seq492 87.8 1e-11 seq4346 86.0 5e-11 >seq4069 Length=334958 Score = 141 bits (156), Expect = 7e-28 Identities = 314/465 (68%), Gaps = 16/465 (3%) Strand=Plus/Minus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGT 282076 ||||| || ||| ||| || |||| ||||| || || || ||| ||||| || ||| Sbjct 7204 TCAATGCCCTCGTACAGGGAGTCAATCTCAATGGTGGTCTGGGCAGTGGAAGA-GAGAGT 7146 Query 282077 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--AT 282134 | | || || | ||||| |||||||| || || || | || ||| | ||| | Sbjct 7145 CCTC--TTCGCCCTCTCACAAGCTGTCCTCAGCCTCCGGAGAGCCCTTG--GGTTGCCAG 7090 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 282194 | | || | || ||||||||||| || | |||| | | || | | || | Sbjct 7089 TGATGTCCTTCTTGCTCTTTCTCTTGAACTCCTGAACAAAGTGGTTGACCATTCTGTTGT 7030 Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254 |||| || ||||| || | | || | || | || || | || | || | || | Sbjct 7029 CAAAGTCCTCACCACCAAGGTGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATCCCCT 6970 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 | |||| | | ||||| |||||| ||| |||||||||| ||||| || || |||| Sbjct 6969 CCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCCAGGTCAAAGATCAGGACAT 6910 Query 282315 TCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || | || | ||| || || ||||||||||| |||| ||||||||||| | Sbjct 6909 TCTTCTCGCCAACACTGGAAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGCAGTCG 6850 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| || || | || |||||| |||||| |||| ||| ||||| || ||||| | Sbjct 6849 GCTCATTGATGATCCGCATAACATTGAGACCACCAATGACTCCAGCATCCTTGGTGGCCT 6790 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || ||||| ||||| || ||||||||||| || | ||| |||| Sbjct 6789 GCCTCTGTGAGTCGTTGAAGTATGCAGGAACTGTGACAACAGCAT 6745 >seq4137 Length=326916 Score = 134 bits (148), Expect = 1e-25 Identities = 309/462 (67%), Gaps = 10/462 (2%) Strand=Plus/Plus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 ||||| || ||| ||| ||||||| ||||| || || || | | || || || | Sbjct 320361 TCAATGCCCTCGTACAGCGAATCAATCTCAATGGTTGTCTGGGCAGTGGAGGAGAGGGTC 320420 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCA 282137 | || || | || || |||||||| || || | | || | | | ||| | | Sbjct 320421 CTCTTCGCCCTCTCGCAAGCTGTCCTCAGCCTCCTCAGAGCCCTGG--GGTTGCCCGTGA 320478 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 |||| | || | |||||||| || |||| ||| | | || | || || |||| Sbjct 320479 TATCTTTCTTGTTCTTTCTCTTAAATTCTTGCACAAAGTGATTGACCATCCGGTTGTCAA 320538 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 |||||||||| || | | ||| | |||| || || | || | || | || |||| Sbjct 320539 AATCTTCACCACCAAGGTGAGTGTCACCTGCTGTGGCCTTGACCTCAAAGATGCCCTCTT 320598 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | ||| | ||||| ||| ||||| || | ||||| || || |||||| Sbjct 320599 CAATGGTAAGAAGGGAGACATCGAAGGTACCACCTCCAAGGTCAAAGATGAGAACATTCT 320658 Query 282318 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || | ||| || || ||||||||||| |||| || || ||||| |||| Sbjct 320659 TCTCACCAACACTGGTGGCCTTCTTGTCAAGACCATATGCAATCGCCGCTGCAGTCGGTT 320718 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||| || || | || ||||||||||||||||| ||| ||||| || ||||| || | Sbjct 320719 CATTGATGATCCGCATGACATTAAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCC 320778 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || || || || || || ||||||||||| | |||||||| Sbjct 320779 TCTGGGAGTCATTGAAGTAGGCAGGAACAGTGACAACGGCAT 320820 >seq1459 Length=692598 Score = 123 bits (136), Expect = 2e-22 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 282332 |||||| ||| |||||||||| ||||| || || |||||| | || | |||| Sbjct 379504 ACATCAAAGGTACCACCACCCAGGTCAAAGATCAGGACATTCTTCTCACCAACGCTGGTA 379563 Query 282333 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 | || ||||||||||| |||| || ||||||||||| ||||| || || | || | Sbjct 379564 GCCTTCTTGTCAAGACCATAGGCAATGGCTGCAGCAGTTGGCTCATTGATGATGCGCATA 379623 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| ||||||||||| ||| || || || ||||| || || ||||| ||||| || Sbjct 379624 ACATTGAGACCAGCAATGACTCCAGCGTCCTTGGTGGCCTGCCTCTGTGAGTCGTTGAAG 379683 Query 282449 TATGCAGGAACAGTAATAACGGC 282471 || ||||| ||||| | ||||| Sbjct 379684 TAGGCAGGGACAGTGACCACGGC 379706 Score = 120 bits (132), Expect = 2e-21 Identities = 149/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 282332 |||||| ||| |||||||||| ||||| || || |||||| | || | |||| Sbjct 240380 ACATCAAAGGTACCACCACCCAGGTCAAAGATCAGGACATTCTTCTCACCAACGCTGGTA 240321 Query 282333 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 | || ||||||||||| |||| || ||||||||||| ||||| || || | || Sbjct 240320 GCCTTCTTGTCAAGACCATAGGCAATGGCTGCAGCAGTTGGCTCATTGATGATGCGCATG 240261 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| ||||||||||| ||| || || || ||||| || || ||||| ||||| || Sbjct 240260 ACATTGAGACCAGCAATGACTCCAGCGTCCTTGGTGGCCTGCCTCTGTGAGTCGTTGAAG 240201 Query 282449 TATGCAGGAACAGTAATAACGGC 282471 || ||||| ||||| | ||||| Sbjct 240200 TAGGCAGGGACAGTGACCACGGC 240178 >seq4468 Length=1072448 Score = 100 bits (110), Expect = 2e-15 Identities = 342/518 (66%), Gaps = 24/518 (5%) Strand=Plus/Minus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||||| |||||| ||||||||||||||||| | ||||| ||| || |||||||| Sbjct 503142 GGCAGACACATTCAGAATACCATTGGCATCAATGTCAAAGCAGACAGGGATCTGAGGGAC 503083 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAA--TTAAATGTTCCCAGATTATTATTATCT 281542 || || | ||||| ||||||| ||| | |||| | || || | | || || Sbjct 503082 TCCCCTAGGGGCAGGGGGGATCCAG---AAAGCTCAAATTTGCCAAGGAGACTGTTGTCC 503026 Query 281543 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT-TTGATTATCTGA 281601 | || | | | |||||| || | | ||||| || ||| ||| ||||| || Sbjct 503025 CTGGTTTGTGTCCTCTCACCCACGTAGACCTGGATCAACACACCAGGGTTGGTTATCAGA 502966 Query 281602 ATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATA 281656 || || | || || ||| || || |||||| | ||||| || || | | Sbjct 502965 GTAGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGATGGTGTTCCTTGGGATGAGCA 502907 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | || ||| | || ||||| || || | ||||||||| || ||||| ||||||| Sbjct 502906 GTCATG--CATGACTCCTCCAGCAGTCTCAAGACCAAGAGACAGTGGAGTCACATCAAAA 502849 Query 281717 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 281776 |||| || | || | || |||| | || ||| ||||| || || | |||| Sbjct 502848 AGGAGAAGGTCCTGCACCTTCTCATTCCCCTCTCCGCTAAGGATAGCAGCCTGGACAGCA 502789 Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGA 281834 |||||||| ||||||||||| ||||| |||| | || || |||| || ||||||| Sbjct 502788 GCACCATAGGCAACAGCTTCGTCAGGGTTAATGCTCTTGCA--GAGTTCCTTCCCATTGA 502731 Query 281835 AAAAATTTGAAAGAAGTTGTCTTA--CCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 | || | ||||| || || | ||| ||| || | || ||| || | ||| | || Sbjct 502730 AGAAGTCCTGCAGAAGCTG-CTGAACCCTGAGG-ATTCTAGTTGAACCACGAACAATGAC 502673 Query 281893 AATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCC 281929 || ||||| | ||||| | || |||| |||| |||| Sbjct 502672 AACATCATGGA-CTGTGCTCTTGTCCATCTTTGCATCC 502636 >seq4234 Length=244235 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||||||||| || | |||| |||| | |||||| | ||| |||| ||| | |||||| Sbjct 219725 GAATTTTTCTTTCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACCGCTGTGAAAACT 219666 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 |||| ||||| ||||| || || |||||| ||| | |||||||| | | Sbjct 219665 TCTGAAACTGGATATATCCAGCGACGACTTGTGAAGGCTATGGAAGATATCATGGTGAAG 219606 Query 435253 TATGATGGTACAGTGAGAAAT 435273 ||||||||||| || |||||| Sbjct 219605 TATGATGGTACTGTAAGAAAT 219585 >seq492 Length=908872 Score = 87.8 bits (96), Expect = 1e-11 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| || || |||| ||||| | ||| | || || |||| || | Sbjct 639655 ACATCAAAGGTACCGCCTCCCAAGTCAAAGACAAGAATTGTC---TCATTGTTTT---TC 639602 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| | ||||||||||| ||||| ||||| | | ||| | Sbjct 639601 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 639542 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | || || || | || |||||||| || ||| ||| ||||| || || || ||||| Sbjct 639541 AATCCTGCTATACGCCCAGCATCTTTTGTTGCTGTTCTCTGTGAGTCATTGAAGTATGCC 639482 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 |||||||||| || || | ||| Sbjct 639481 GGAACAGTAACTACTGCTTTTGT 639459 >seq4346 Length=1110530 Score = 86.0 bits (94), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 282328 TTGGTTTT--TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||| |||| | |||| |||||| |||| | ||||||||||| ||||| ||||| | Sbjct 474436 TTGTTTTTCCTCTCAAAACCATAAGCAAGGGATGCAGCAGTTGGCTCATTTATAATGCGG 474377 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||| | | || || || | ||| |||||||| || ||| || ||||| || || Sbjct 474376 AGAACTTCCAATCCTGCTATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTG 474317 Query 282446 AAATATGCAGGAACAGTAATAACGGC 282471 || ||||| |||||||||| ||| || Sbjct 474316 AAGTATGCTGGAACAGTAACAACTGC 474291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740408388909972