Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2624 93.3 4e-14 seq1692 82.4 7e-11 >seq2624 Length=565299 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 137267 ||| | |||||| || || || ||||||||||| || |||| || || || || Sbjct 25562 ATGGAGTGTAGACTCCTTCTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCCAGCTG 25621 Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327 || |||||| |||| ||||| ||||| || ||||| || || || ||||| || || Sbjct 25622 CTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 25681 Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387 || | | || | |||||||| || ||| || |||| || | ||||||||||| Sbjct 25682 AGCCTTCACGTTGTCGATCGTGTCTGAGGATTCGACCTCAAGCGTAATTGTCTTGCCGGT 25741 Query 137388 CAATGTTTTTACGAATATTTGCAT 137411 ||| || || || || || ||||| Sbjct 25742 CAAGGTCTTGACAAAGATCTGCAT 25765 >seq1692 Length=674084 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261 || ||||| | ||| || ||||| || ||||||||||| ||| | ||||| | ||||| Sbjct 587154 ACCAAATGGAGTGTTGACTCTTTCTGAATGTTGTAATCAGCT-AATGTGCGCCCATCTTC 587212 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 | ||| || || ||| | ||||| | ||||||||| || || ||||| |||||||| Sbjct 587213 CAATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGGAATGCCCTCTTTGTC 587269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488516385050400