Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4493 125 1e-23 seq2624 120 6e-22 seq4197 114 3e-20 seq2778 113 9e-20 >seq4493 Length=164055 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| || || | ||| || || || || ||||| || || || |||| Sbjct 95746 CCTCCCCTGAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 95687 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || ||||| || || || || ||||||||||| || | || |||||||| || Sbjct 95686 AGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCTGGGGGA 95627 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || || || ||| | || || Sbjct 95626 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACC 95567 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 95566 TCAAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 95520 >seq2624 Length=565299 Score = 120 bits (132), Expect = 6e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| || | | || || | || || ||||| || ||||| || || ||||||| Sbjct 25537 TACCTCCCCTGAGCCTGAGCACAAGATGGAGTGTAGACTCCTTCTGAATGTTGTAATCAG 25596 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||||||||| || | || || || |||| Sbjct 25597 CCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAG 25656 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCT 82760 | || || ||||| || || ||||| || || || || || ||||| || | ||| ||| Sbjct 25657 GGATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCGATCGTGTC-TGAGGATTCG 25715 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 25716 ACCTCAAGCGTAATTGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 25765 >seq4197 Length=262831 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || || || ||||| ||||| ||||| | || | | || Sbjct 76810 ACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGGCC 76751 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 76750 ATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 76691 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| || || || || ||||| || ||| | || || |||| || || Sbjct 76690 GTCTTGGATCTTGGCCTTCACGTTGTCAATTGTGTCAGACGACTCAACCTCCAGGGTGAT 76631 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| ||||| ||||| |||||||| Sbjct 76630 TGTTTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 76595 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | ||| || || || || ||||| || || || |||| || | | || || Sbjct 76578 AGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCC 76519 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || ||||||||||| || | || || || || || || || ||||| || Sbjct 76518 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 76459 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || ||||| ||||| || || | || || || | || || ||| Sbjct 76458 TGGATCTTGGCCTTCACATTGTCAATTGTGTCTGATGACTCAACCTCAAGGGTGATGGTC 76399 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| |||| ||||| ||||| |||||||| Sbjct 76398 TTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 76367 >seq2778 Length=1391004 Score = 113 bits (124), Expect = 9e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || || | || || || | ||| || ||||| |||||||| || || || || | Sbjct 173773 ACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGC 173832 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || || || || || || || |||||||| || | || || ||||| || Sbjct 173833 AAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGG 173892 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761 || |||||||| || |||||||| || || ||||| || || || || || | || | Sbjct 173893 GATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGG-AGCTCTCAA 173951 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| | | || ||||||||||| | ||||| ||||| |||||||| Sbjct 173952 CCTCCAGAATAATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 174000 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | |||||| || | ||| || || || || ||||| || || || || | Sbjct 174230 CCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 174289 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || || || || || || |||||||||||||| || | || || ||||| || Sbjct 174290 AGGGTCCTGCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGA 174349 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || |||||||| || || || || |||||||| || | || || Sbjct 174350 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATCGTGTCTGATGACTCAACC 174409 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| || || |||||||| Sbjct 174410 TCAAGTGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 174456 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 82632 TTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691 || || |||| || | || || || || ||||| || ||||||||||| || | || Sbjct 175101 TTGTAGTCAGCAAGGGTCCTGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGACGCTGC 175160 Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 || || ||||| || || ||||| || || |||||||| || ||||| ||||| |||||| Sbjct 175161 TGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCA 175220 Query 82752 TTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 175221 GAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 175279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981770314772958