Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4234 87.8 4e-12 >seq4234 Length=244235 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/188 (72%), Gaps = 10/188 (5%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||| | ||||| |||| ||||| |||||| ||||||| || || |||||| Sbjct 221172 AGACACCTCAATGATGGGGATTTTGTTCTTTTCAATCGGCAACCCAGTCTTCACAAAATG 221113 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGACATTTC-GATTAAA--TGT 305421 || || |||| |||| | ||| ||||| | ||| | |||| | ||||| ||| Sbjct 221112 TCCATCATGGGTCATCGCATTAAA--ATTATGCCCTATTCAACTTTCCGCTTAAACTTGT 221055 Query 305422 AAGTG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTAC 305480 || ||| | || || ||||| ||||||||||| |||||||||||||||||||| | Sbjct 221054 CCGTCACTT---CACCGTACAATGCAGATTTTGATGGGGATGAAATGAATATGCATGTTC 220998 Query 305481 CTCAATCA 305488 |||| ||| Sbjct 220997 CTCAGTCA 220990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186744038291642