Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2778 93.3 3e-14 seq348 93.3 3e-14 seq4294 89.7 3e-13 seq1848 89.7 3e-13 seq1042 87.8 1e-12 seq1692 84.2 1e-11 seq2624 82.4 5e-11 >seq2778 Length=1391004 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | || | ||||| || || || |||||| || |||||||| |||| Sbjct 173773 ACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCGGC 173832 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||| || || |||||||| |||| |||||||| ||| | || Sbjct 173833 AAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGG 173892 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||| || |||| ||| ||| | ||||||| || | Sbjct 173893 GATACCTTCCTTGTCCTGAATCTTGGCCTTCA-CATTGTCGATGGTGTCGGAGCTCTCAA 173951 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | | || || || ||||| | || || ||||||||||||||| Sbjct 173952 CCTCCAGAATAATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCATA 174001 >seq348 Length=941607 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | | | |||||||| |||||| |||||| || ||||||||||| | Sbjct 470072 CCACCTCTGAGCCTCAGGACCAAATGGAGAGTGGACTCTTTCTGAATGTTGTAATCAGCT 470013 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||| | | || |||||||| || || |||||||||| | ||||||||| | || Sbjct 470012 AATGTGTGCCCATCTTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGGA 469953 Query 33643 ACACCTTCTTTGTC 33656 | ||| |||||||| Sbjct 469952 ATACCCTCTTTGTC 469939 >seq4294 Length=230714 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| |||||| | || |||| || || ||||| || Sbjct 45171 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 45112 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || |||| | || || ||||| || || |||| | | Sbjct 45111 GATGAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 45053 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| || ||||| || | |||||| || || ||||| | || || | Sbjct 45052 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCTGTCAGGGTCTTCA 44993 Query 33737 CAAAGATCTGCATAGT 33752 | ||||||||||| || Sbjct 44992 CGAAGATCTGCATCGT 44977 >seq1848 Length=11040 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| |||| || || |||||||| Sbjct 5825 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 5766 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| || ||||| || | || | ||| || ||||| || || || | | | Sbjct 5765 GATCAAGCGTTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 5707 Query 33678 AGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 |||| ||||||| || ||||| |||| ||||| || || || || | || || | Sbjct 5706 TGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATAGTCTTGCCGGTCAGAGTCTTGA 5647 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 5646 CGAAGATCTGCAT 5634 >seq1042 Length=22717 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || |||||||| || | | ||||||| | || ||| Sbjct 10581 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCCAATGTGCGTCCATCCTCC 10522 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || ||||| || ||||| ||||||||||| |||||| | || | ||||| ||||| Sbjct 10521 AACTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATCCCTTCCTTGTC 10466 >seq1692 Length=674084 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || || |||||| || ||||||||||| | | |||||| | || ||| Sbjct 587154 ACCAAATGGAGTGTTGACTCTTTCTGAATGTTGTAATCAGCTAATGTGCGCCCATCTTCC 587213 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 ||||| || || |||||||||| | ||||||||| | || | || |||||||| Sbjct 587214 AATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGGAATGCCCTCTTTGTC 587269 >seq2624 Length=565299 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| || ||||| | || || Sbjct 25100 CACCAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTC 25159 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || |||||||||| ||||||||| || | || | || || ||||| Sbjct 25160 CAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 25219 Query 33660 AATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| | | |||| ||||| ||| || || |||| ||||| || | Sbjct 25220 GATCTTGGCCTTCA-CGTTGTCAATCGTGTCAGATGACTCGACCTCAAGAGTGATGGTCT 25278 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || |||||||||||| Sbjct 25279 TGCCAGTCAATGTCTTGACGAAGATCTGCATA 25310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328685884506240