Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4294 113 1e-19 seq2778 111 4e-19 seq4493 102 2e-16 seq891 98.7 2e-15 seq1848 96.9 8e-15 seq3577 93.3 1e-13 seq192 93.3 1e-13 seq4146 89.7 1e-12 seq2570 86.0 1e-11 >seq4294 Length=230714 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || ||||| |||| ||||| || ||||| |||| Sbjct 44995 AAGACCCTGACAGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 45054 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| ||||||| || | || |||||| Sbjct 45055 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAGCAGCGTCTCATCTTC 45114 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| ||||||||||| | || | ||||| |||||| ||||||| ||||| Sbjct 45115 GCCGGCAAGCAGCTGGAAGATGGACGCACGCTCGCCGACTACAACATCCAGAAGGAGTCG 45174 Query 206365 ACTCTTCACCTTGTT 206379 || || ||||| ||| Sbjct 45175 ACCCTGCACCTGGTT 45189 >seq2778 Length=1391004 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || |||||||| || || || | | |||| || || || || ||| Sbjct 173997 CAGATCTTTGTCAAGACTCTCACAGGCAAGACCATTATTCTGGAGGTTGAGAGCTCCGAC 173938 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || ||||| || || ||| || Sbjct 173937 ACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAGCAG 173878 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| |||||| |||| ||||| | || | ||||| |||||| | Sbjct 173877 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTGCCGACTACAACATT 173818 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||||| || ||||| || Sbjct 173817 CAGAAAGAGTCTACCCTCCACCTGGT 173792 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || || || || ||||| | || Sbjct 174441 AAGACTCTCACTGGCAAGACCATCACACTTGAGGTTGAGTCATCAGACACGATTGACAAC 174382 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || ||| || ||| || | || ||||| Sbjct 174381 GTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCCTCATCTTT 174322 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||| |||| ||||| ||||| | ||||| |||||| ||||||| ||||| Sbjct 174321 GCTGGAAAGCAGCTGGAGGATGGCAGGACCCTTGCCGACTACAACATCCAGAAGGAGTCC 174262 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 174261 ACCCTTCACCTTGT 174248 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| || ||||| ||||||| || ||||| || | ||||| ||||| ||| Sbjct 174248 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTCC 174307 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| || ||||| || || || || Sbjct 174308 AGCTGCTTTCCAGCAAAGATGAGGCGCTGCTG 174339 >seq4493 Length=164055 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| | || ||||| |||||| Sbjct 95979 CAGATCTTTGTGAAGACATTGACTGGCAAGACTATCACCCTTGAGGTGGAGTCCTCTGAC 96038 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || || || || ||| || Sbjct 96039 ACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGCAG 96098 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| |||||| |||| ||||| |||||| | || || |||||| || Sbjct 96099 CGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACTCTTGCTGACTACAACATC 96158 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 96159 CAGAAGGAGTCAACCCTTCACCTTGT 96184 Score = 98.7 bits (108), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| || ||||| ||||||| || |||||||| | |||||| ||||| ||| Sbjct 96184 ACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTGCCATCCTCC 96125 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||| |||||||| || || || Sbjct 96124 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTG 96093 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| | || ||||| |||||| Sbjct 95523 CAGATTTTTGTGAAGACATTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCCTCTGAC 95582 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || || || Sbjct 95583 ACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 95642 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || |||||| |||| || || ||||| | || || |||||| || Sbjct 95643 CGTCTTATCTTTGCTGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCTGACTACAACATC 95702 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 95703 CAGAAGGAGTCCACCCTTCACCTTGT 95728 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| || ||||| ||||||| || |||||||| | ||||| || || ||| Sbjct 95728 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCC 95669 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || || |||||||| || || ||| Sbjct 95668 AGCTGCTTGCCAGCAAAGATAAGACGCTGCTGA 95636 >seq891 Length=1582050 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| ||||| ||||| |||||||| |||| Sbjct 1149678 AAGACCCTGACGGGCAAGACCATCACGTTGGAGGTGGAGTCCTCTGACACCATCGACAAC 1149619 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 1149618 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTC 1149559 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | ||||| |||||| ||||||| ||||| Sbjct 1149558 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 1149499 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1149498 ACGCTGCACCTGGT 1149485 >seq1848 Length=11040 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| | || ||||| ||| ||| Sbjct 6093 CAGATTTTTGTGAAGACTTTGACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 6152 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| |||||| || Sbjct 6153 ACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 6212 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || |||| || |||||| || Sbjct 6213 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAACATC 6272 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || ||||||||||| || Sbjct 6273 CAGAAGGAATCCACTCTTCACCTGGT 6298 >seq3577 Length=483236 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| ||||| ||||| || ||||| |||| Sbjct 183740 AAGACCCTGACGGGCAAGACCATCACGTTGGAGGTGGAGTCCTCAGACACCATCGACAAC 183799 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 183800 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTC 183859 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | ||||| |||||| ||||||| ||||| Sbjct 183860 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 183919 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 183920 ACCCTCCACCTGGT 183933 >seq192 Length=981986 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 848812 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 848871 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 848872 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGTCTCATCTTC 848931 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| |||||| | || | ||||| || ||| ||||||| ||||| Sbjct 848932 GCCGGCAAGCAGCTGGAGGATGGACGAACGCTCGCCGACTATAACATCCAGAAGGAGTCG 848991 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 848992 ACCCTGCACCTGGT 849005 >seq4146 Length=1227772 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| || ||||| |||| || | |||||| ||| Sbjct 327859 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGTCCATCCTCC 327800 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||||||||| ||||| || || Sbjct 327799 AGCTGCTTTCCGGCGAAGATCAGCCGCTGCTG 327768 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 206271 AGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAG 206330 |||||| ||||||| || | || |||||||||||||||||| |||| |||||| | Sbjct 327752 AGGAATCCCGCCGGACCAGCAGCGGCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACG 327811 Query 206331 GACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 || |||| || |||||| ||||||| ||||| || || ||||| || Sbjct 327812 CACCCTGGCAGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGT 327859 >seq2570 Length=608568 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| || | || ||||| || || ||||| ||||||| || |||||||||| || Sbjct 261057 CGAAGCCTGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 260998 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | || || ||||||||||| ||||||||||| ||||| || ||| Sbjct 260997 CGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGA 260953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181752327518762