Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq4204 527 2e-145 seq3130 361 2e-95 seq3676 266 1e-66 seq4136 210 6e-50 seq203 147 7e-31 seq4428 120 9e-23 >seq4204 Length=279751 Score = 527 bits (584), Expect = 2e-145 Identities = 710/982 (72%), Gaps = 25/982 (3%) Strand=Plus/Minus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 216742 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 216683 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | |||| || ||||| || ||||| | || || | ||| Sbjct 216682 CC-TACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGT 216624 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || || | |||||||||||||| || || Sbjct 216623 AGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTAT 216564 Query 19690 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || ||| | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 216563 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 216506 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19807 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 216505 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTA 216446 Query 19808 CACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 19867 |||||| | |||| | | ||| ||||| || ||||||||||| || | || || Sbjct 216445 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 216386 Query 19868 GGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTC 19927 || ||| | ||||||||| |||||| || | ||| | ||| || Sbjct 216385 GGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTAC---------------TGCTGT- 216342 Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | | || || ||||||| || || ||||| |||| ||||||||| || || || Sbjct 216341 TTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATC 216282 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| ||||||| ||| | |||||||| || || || ||||| || ||||| || || Sbjct 216281 TGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATT 216222 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||| | ||||| |||||||||||||| || || ||||||||||| ||||| ||||| Sbjct 216221 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 216162 Query 20107 GCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTT 20165 | || || || | | ||| | | || || |||||| | ||| | || | |||| Sbjct 216161 CTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTT 216103 Query 20166 ACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGAC 20225 ||| ||||| ||||| |||||||| ||||| || || |||||||||||||||||||| | Sbjct 216102 ACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 216043 Query 20226 GTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTG 20285 | || ||||||||||| ||| ||| ||||| |||||| ||||||||||| | |||| Sbjct 216042 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 215983 Query 20286 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 20345 | ||||| || ||||||||||||||| |||| || || || ||| ||||| || || | Sbjct 215982 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 215923 Query 20346 TGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTT 20405 | ||||| ||||| || ||||| || | || || | | | ||||| || ||| |||||| Sbjct 215922 TAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATACTT 215863 Query 20406 GGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTC 20465 ||||||| || |||| ||||||||||| || | || || ||||| ||||| ||||||| Sbjct 215862 GGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTC 215803 Query 20466 ATAACTTCCCACTTGACCTTGC 20487 | |||||||| || ||||| || Sbjct 215802 ACAACTTCCCTCTAGACCTAGC 215781 >seq3130 Length=1765 Score = 361 bits (400), Expect = 2e-95 Identities = 514/712 (72%), Gaps = 12/712 (2%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 |||| || | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 1358 TAACCGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT 1299 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || ||||| || ||||| || || || |||| Sbjct 1298 CCC-TACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAG 1240 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || || || || || ||| | |||||||||||||| || | Sbjct 1239 TAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTA 1180 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | || || |||||| | ||||| ||||||||||| Sbjct 1179 TCTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTG 1122 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 ||||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 1121 GGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCT 1062 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 |||||| | |||| | | ||| ||||| || ||||||||||| || | || || Sbjct 1061 ACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCT 1002 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 1001 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT 942 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | | || || ||||||| || || ||||| |||| ||||||||| || || | Sbjct 941 -TTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATAT 883 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| ||| | |||||||| || || || ||||| || ||||| || | Sbjct 882 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCAT 823 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||| | ||||| ||||||||||||||||| || ||||||||||| || || |||| Sbjct 822 TTCACATGTTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTT 763 Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | |||| || || | ||| | | || || |||||| | ||| | || ||||| Sbjct 762 C-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGT 704 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTT 20216 |||| ||||| ||||| |||||||| ||| || || ||||||||||||| Sbjct 703 TACAGATTTGGTCAAGAGGAAGAGAC--TTAATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 266 bits (294), Expect = 1e-66 Identities = 369/512 (72%), Gaps = 11/512 (2%) Strand=Plus/Plus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| || ||||| || || || ||||| || |||||||| || || || || || Sbjct 288282 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 288341 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCA 19715 | || | | |||||||||||||| || || || || ||| | |||| | | || Sbjct 288342 TTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCG 288401 Query 19716 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCT 19775 || |||||| | ||||| |||||||||||||||||| || ||||||| ||| | | Sbjct 288402 --GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTAT 288459 Query 19776 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACA 19835 |||| || || || | | || | || | |||||| | |||| | | ||| | Sbjct 288460 ACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATA 288519 Query 19836 TGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCT 19895 |||| || ||||||||||| || | || || || ||| | ||||||||| |||||| | Sbjct 288520 TGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT 288579 Query 19896 ACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGT 19954 | || ||||| ||||||| || |||| || ||||| | | || || ||||||| || Sbjct 288580 ATTCAGCTCCTGTTGCAGTTGCTACTGCTGT-TTTCTTGATTTATCCTATTGGTCAAGGA 288638 Query 19955 AGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTC 20014 || ||||| |||| ||||||||| || || || ||||| ||||||| ||| | |||||| Sbjct 288639 AGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTC 288698 Query 20015 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTC 20074 || | || || ||||| || ||||| || || | |||| | ||||| |||| || Sbjct 288699 CAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTG-----TTT 288753 Query 20075 GGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 || || || ||||||||||| ||||| ||||| Sbjct 288754 GGCGGTTCCCTATTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 210 bits (232), Expect = 6e-50 Identities = 197/251 (78%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 20171 TTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTG 20230 ||||| ||||| |||||||| ||||| || || |||||||||||||||||||| || || Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 20231 ATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGG 20290 ||||||||||| ||| ||| ||||| |||||| ||||||||||| | ||||| ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 20291 CCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAAC 20350 || || ||||||||||||||| |||| || || || ||| ||||| || || || ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 20351 GGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCT 20410 || ||||| || ||||| || | | || | | | ||||| || ||| ||||||||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 20411 GACATTCTCAA 20421 || || |||| Sbjct 3033 GATATCATCAA 3023 >seq203 Length=971741 Score = 147 bits (162), Expect = 7e-31 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 20294 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 20353 || ||||||||||||||| |||| || || || ||| ||||| || || || ||||| Sbjct 777823 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGA 777882 Query 20354 TTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGAC 20413 ||||| || ||||| || | | || | | | ||||| || ||| ||||||||||||| Sbjct 777883 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 777942 Query 20414 ATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTC 20473 || |||| ||||||||||| || | || || ||||| ||||| |||||||| |||||| Sbjct 777943 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 778002 Query 20474 CCACTTGACCTTGC 20487 || || ||||| || Sbjct 778003 CCTCTAGACCTAGC 778016 >seq4428 Length=185154 Score = 120 bits (132), Expect = 9e-23 Identities = 118/151 (78%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 19964 GATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAA 20023 |||| ||||||||| | || || ||||| ||||||| ||| | |||||||| || || Sbjct 19698 GATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 19639 Query 20024 CATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCA 20083 | ||||| || ||||| | || |||||| | ||||| |||||||||||||| || || Sbjct 19638 TACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 19579 Query 20084 CTATTCAGTGCGATGCACGGTTCGCTTGTTA 20114 ||||||||||| |||| ||||| |||| || Sbjct 19578 CTATTCAGTGCTTTGCATGGTTC-CTTGGTA 19549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148820808079476