Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq4204 471 1e-128 seq3130 304 4e-78 seq3676 215 2e-51 seq4136 210 6e-50 seq203 145 2e-30 seq1536 82.4 2e-11 >seq4204 Length=279751 Score = 471 bits (522), Expect = 1e-128 Identities = 696/982 (71%), Gaps = 23/982 (2%) Strand=Plus/Minus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 216742 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 216683 Query 28699 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || | || ||| || | |||| || ||||| || ||||| | || || | ||| Sbjct 216682 CC-TACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGT 216624 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 || |||||||| || || || ||||| || | | | || ||||||||||| || || Sbjct 216623 AGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTAT 216564 Query 28818 ATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 28875 || || ||| | | || | | || || |||||| | ||||| |||||||||||| Sbjct 216563 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 216506 Query 28876 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 28935 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 216505 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTA 216446 Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 |||||| | |||| || | ||| ||||| || ||||||||||| || | || || Sbjct 216445 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 216386 Query 28996 GGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTT 29055 || ||| | || |||||| ||| ||||| | |||| | ||| ||| Sbjct 216385 GGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTAC---------------TGCTGTT 216341 Query 29056 TTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCA 29115 ||| | | || || | |||||||| ||| || | |||||||| || || || Sbjct 216340 TTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 216281 Query 29116 GGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 29175 || || ||||||| ||| | || ||||| || || || ||||| || ||||| || || Sbjct 216280 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTT 216221 Query 29176 CACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCG 29235 |||||| | || || ||||| || ||||| || || ||||| ||||| ||||| ||||| Sbjct 216220 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCC 216161 Query 29236 CTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTA 29294 | || || || | | ||| | | || || |||||| | ||| || | ||||| Sbjct 216160 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTA 216102 Query 29295 CAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACG 29354 || ||||| ||||| |||||||||||||| || || |||||||| ||||||||||| || Sbjct 216101 CAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCG 216042 Query 29355 TTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 29414 || ||||||||||||||| ||| || || |||||| ||||||||||| | ||||| Sbjct 216041 ATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGC 215982 Query 29415 CTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCT 29474 ||||| || ||||||||||||||| |||| || || || ||| ||||| || || || Sbjct 215981 TTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 215922 Query 29475 GAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTG 29534 ||||| || || || ||||| || | || || | | | ||||| || ||||||||||| Sbjct 215921 AAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATACTTG 215862 Query 29535 GGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCA 29594 ||||||| | |||| || ||||| || || | ||||||||||| || ||||||||||| Sbjct 215861 GGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCA 215802 Query 29595 TAACTTCCCACTTGATCTGGCT 29616 |||||||| || || || ||| Sbjct 215801 CAACTTCCCTCTAGACCTAGCT 215780 >seq3130 Length=1765 Score = 304 bits (336), Expect = 4e-78 Identities = 499/711 (70%), Gaps = 10/711 (1%) Strand=Plus/Minus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 |||| || | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 1358 TAACCGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT 1299 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | || ||| || | |||| || ||||| || ||||| || || || |||| Sbjct 1298 CCC-TACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAG 1240 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || || ||||| |||| | | || ||||||||||| || | Sbjct 1239 TAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTA 1180 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || || ||| | | || | | || || |||||| | ||||| ||||||||||| Sbjct 1179 TCTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTG 1122 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 ||||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 1121 GGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCT 1062 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACT 28994 |||||| | |||| || | ||| ||||| || ||||||||||| || | || || Sbjct 1061 ACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCT 1002 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGT 29054 || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| || Sbjct 1001 GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT 942 Query 29055 TTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTC 29114 |||| | | || || | |||||||| ||| || | |||||||| || || || Sbjct 941 TTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATC 882 Query 29115 AGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTT 29174 || || ||||||| ||| | || ||||| || || || ||||| || ||||| || || Sbjct 881 TGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATT 822 Query 29175 CCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 |||||| | || || ||||| || |||||||| || ||||| ||||| || || ||||| Sbjct 821 TCACATGTTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTC 762 Query 29235 GCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTT 29293 | || || | || | ||| | | || || |||||| | ||| || |||||| Sbjct 761 CTTGGTAACCT-CTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTT 703 Query 29294 ACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTT 29344 ||| ||||| ||||| ||||||||| ||| || || |||||||| |||| Sbjct 702 ACAGATTTGGTCAAGAGGAAGAGACT--TAATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 215 bits (238), Expect = 2e-51 Identities = 358/513 (70%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| || ||||| || || || ||||| || |||||||| || || || ||||| Sbjct 288282 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 288341 Query 28786 GCTGGAAGTCTT--CTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAG 28841 | | |||| || ||||||||||| || || || || ||| | | || | | | Sbjct 288342 TTCG--ATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTG 288399 Query 28842 CAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCT 28901 | || |||||| | ||||| |||||||||||||||||| || ||||||| ||| | Sbjct 288400 CG--GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTT 288457 Query 28902 CTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTA 28961 ||||| || || || | | || | || | |||||| | |||| || | ||| Sbjct 288458 ATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 288517 Query 28962 CATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGC 29021 ||||| || ||||||||||| || | || || || ||| | || |||||| ||| || Sbjct 288518 TATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGC 288577 Query 29022 ATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGG 29081 ||| |||||||| || |||| || |||| |||||| | | || || | |||||||| Sbjct 288578 ATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGG 288637 Query 29082 TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTT 29141 ||| || | |||||||| || || || || || ||||||| ||| | || || Sbjct 288638 AAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATT 288697 Query 29142 CCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTT 29201 ||| | || || ||||| || ||||| || || | |||| | || || || |||| Sbjct 288698 CCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC-----TGTT 288752 Query 29202 CGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 || || || ||||| ||||| ||||| ||||| Sbjct 288753 TGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 210 bits (232), Expect = 6e-50 Identities = 197/251 (78%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 29299 TTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTG 29358 ||||| ||||| |||||||||||||| || || |||||||| ||||||||||| || || Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 29359 ATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGG 29418 ||||||||||||||| ||| || || |||||| ||||||||||| | ||||| ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 29419 CCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAAC 29478 || || ||||||||||||||| |||| || || || ||| ||||| || || || ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 29479 GGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCT 29538 || || || || ||||| || | | || | | | ||||| || ||||||||||||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 29539 GATGTTCTCAA 29549 ||| | |||| Sbjct 3033 GATATCATCAA 3023 >seq203 Length=971741 Score = 145 bits (160), Expect = 2e-30 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 29422 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 29481 || ||||||||||||||| |||| || || || ||| ||||| || || || ||||| Sbjct 777823 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGA 777882 Query 29482 TTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGAT 29541 || || || ||||| || | | || | | | ||||| || |||||||||||||||||| Sbjct 777883 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 777942 Query 29542 GTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTC 29601 | |||| || ||||| || || | ||||||||||| || ||||||||||| |||||| Sbjct 777943 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 778002 Query 29602 CCACTTGATCTGGCT 29616 || || || || ||| Sbjct 778003 CCTCTAGACCTAGCT 778017 >seq1536 Length=687949 Score = 82.4 bits (90), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 29291 GTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTG 29350 ||||||| |||| | ||||||||||||||||||| || || | | |||| |||||||||| Sbjct 571122 GTTACAAATTTG-ATAAGAAGAAGAGACTTATAATATTGTGGTCACTCATGGTTACTTTG 571064 Query 29351 GACGTTTGATCTTCCAATAT 29370 | || || |||||| ||||| Sbjct 571063 GCCGATTAATCTTCTAATAT 571044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146657724240612