Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq4204 535 1e-147 seq3130 398 2e-106 seq3676 304 4e-78 seq4136 168 2e-37 seq203 129 2e-25 seq4428 123 7e-24 >seq4204 Length=279751 Score = 535 bits (592), Expect = 1e-147 Identities = 710/978 (73%), Gaps = 31/978 (3%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| ||||| ||||| || ||||||| | Sbjct 216741 ACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 216682 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| || ||||| |||||||| | || |||| || Sbjct 216681 C-TACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGT 216624 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | | | | |||||||||||||| || || Sbjct 216623 AGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTAT 216564 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 216563 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 216506 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 216505 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTA 216446 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||| ||||| || ||||||||||| || | || || Sbjct 216445 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 216386 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||| ||||||||| |||||| || | |||| ||| || | Sbjct 216385 GGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTACTGCTG---------------TT 216341 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGG---TTCCTTTAGCGACGCTATGCCTTTGGGTATT 19203 ||| | | ||||| |||||||||| || || | || | ||||||||| || || Sbjct 216340 TTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATA 216284 Query 19204 AGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCG 19263 |||||| ||||||| ||| ||||||||||||| || || |||||||| ||||| || Sbjct 216283 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCA 216224 Query 19264 TTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGT 19323 || |||||| | ||||| |||||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 216223 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 216164 Query 19324 TCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAACTATGG 19382 || | || || || | | ||| | | ||||| |||||| | | |||| || | || Sbjct 216163 TCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGG 216105 Query 19383 CTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGG 19442 |||| ||||| ||||| |||||||||||||| ||||| || |||||||| || ||||| Sbjct 216104 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGG 216045 Query 19443 TCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGC 19502 || | || ||||| || || || ||||| |||||| |||| ||||| ||||| Sbjct 216044 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGC 215985 Query 19503 TGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAA 19562 |||||||||||| || || |||||||| | || | || | || || ||||| ||||| Sbjct 215984 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 215925 Query 19563 CTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATAC 19622 | | || || || || || ||||| || | ||||| | | | ||||| || ||| |||| Sbjct 215924 CCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATAC 215865 Query 19623 TTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGC 19682 ||||||||| || |||| |||||||| || || | || |||||||||||||||||||| Sbjct 215864 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 215805 Query 19683 TCATAACTTCCCACTTGA 19700 ||| |||||||| || || Sbjct 215804 TCACAACTTCCCTCTAGA 215787 >seq3130 Length=1765 Score = 398 bits (440), Expect = 2e-106 Identities = 522/711 (73%), Gaps = 18/711 (3%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 || || |||| || || || ||||||||||| ||||| ||||| || ||||||| | Sbjct 1356 ACCGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 1297 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| || ||||| |||||||| || || ||||| || Sbjct 1296 C-TACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGT 1239 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || | | |||||||||||||| || || Sbjct 1238 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 1179 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 1178 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 1121 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 1120 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTA 1061 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||| ||||| || ||||||||||| || | || || Sbjct 1060 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 1001 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||| ||||||||| |||||| || |||||||||||||| || || |||| || Sbjct 1000 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 941 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGG---TTCCTTTAGCGACGCTATGCCTTTGGGTATT 19203 ||| | | ||||| |||||||||| || || | || | ||||||||| || || Sbjct 940 TTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATA 884 Query 19204 AGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCG 19263 |||||| ||||||| ||| ||||||||||||| || || |||||||| ||||| || Sbjct 883 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCA 824 Query 19264 TTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGT 19323 || |||||| | ||||| |||||||| ||||| || || ||||| ||||| || || ||| Sbjct 823 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGT 764 Query 19324 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGG 19382 || |||| || || | ||| | | ||||| |||||| | | |||| || |||| Sbjct 763 TC-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGG 705 Query 19383 CTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGG 19433 |||| ||||| ||||| ||||||||| ||| ||||| || |||||||| Sbjct 704 TTACAGATTTGGTCAAGAGGAAGAGACT--TAATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 304 bits (336), Expect = 4e-78 Identities = 436/604 (72%), Gaps = 23/604 (4%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| ||| || || || ||||||||||| ||||| |||| | ||||||| | Sbjct 288196 ACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCC 288255 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || || | || ||| | ||| || ||||| |||||||| || || ||||| || Sbjct 288256 C-TACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGT 288313 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTT--CTTTATGGAAACAACATC 18906 ||| |||||||| || || ||||||||| | | |||| |||||||||||||| || Sbjct 288314 AGATATTGATGGTATTCGTGAGCCTGTTTTCG--ATTCTTTACTTTATGGAAACAATATT 288371 Query 18907 ATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTT 18964 || || || ||| | |||| | | || || |||||| | ||||| |||||||||| Sbjct 288372 ATCTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTT 288429 Query 18965 GGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCT 19024 |||||||| || ||||||| ||| | ||||| || || || | | || | || Sbjct 288430 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTC 288489 Query 19025 TCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGAC 19084 | |||||| | |||| || | ||| ||||| || ||||||||||| || | || | Sbjct 288490 TACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTC 288549 Query 19085 TAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGG 19144 | || ||||| ||||||||| |||||| || |||||||||||||| | || |||| | Sbjct 288550 TGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTG 288609 Query 19145 TCTTCCTTGTCTATCCATTTGGTCAAG---GTTCCTTTAGCGACGCTATGCCTTTGGGTA 19201 | ||| | | ||||| ||||||||| ||| || | || | ||||||||| || | Sbjct 288610 TTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAA 288666 Query 19202 TTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACC 19261 | |||||| ||||||| ||| |||||||||||| || || |||||||| ||||| | Sbjct 288667 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATC 288726 Query 19262 CGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACG 19321 | || | |||| | ||||| || |||| ||||| || ||||| ||||| ||||| | Sbjct 288727 CATTTCGCATGTTAGGTGTAGC-----TGTTTGGCGGTTCCCTATTCAGTGCTATGCATG 288781 Query 19322 GTTC 19325 |||| Sbjct 288782 GTTC 288785 >seq4136 Length=310402 Score = 168 bits (186), Expect = 2e-37 Identities = 188/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 19390 TTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTT 19449 ||||| ||||| |||||||||||||| ||||| || |||||||| || ||||| || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 19450 ATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGG 19509 || ||||| || || || ||||| |||||| |||| ||||| |||||||||||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 19510 CCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAAT 19569 ||||| || || |||||||| | || | || | || || ||||| |||||| | || Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 19570 GGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCT 19629 || || || || ||||| || | |||| | | | ||||| || ||| ||||||||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 19630 GACATTCTCAA 19640 || || |||| Sbjct 3033 GATATCATCAA 3023 >seq203 Length=971741 Score = 129 bits (142), Expect = 2e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 19512 TGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGG 19571 ||| || || |||||||| | || | || | || || ||||| |||||| | || || Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 19572 CTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGA 19631 || || || ||||| || | |||| | | | ||||| || ||| ||||||||||||| Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 19632 CATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTT 19691 || |||| |||||||| || || | || ||||||||||||||||||||||| ||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 19692 CCCACTTGA 19700 ||| || || Sbjct 778002 CCCTCTAGA 778010 >seq4428 Length=185154 Score = 123 bits (136), Expect = 7e-24 Identities = 140/185 (76%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||||| | || |||||| ||||||| ||| ||||||||||||| || | || Sbjct 19693 TATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGTACAA 19634 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 |||||| ||||| | || |||||| | ||||| |||||||| |||||||| || ||||| Sbjct 19633 CATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATT 19574 Query 19308 TAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGG 19366 ||||| |||| ||||| |||| || || | ||| | | ||||| |||||| | | Sbjct 19573 CAGTGCTTTGCATGGTTC-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATG 19515 Query 19367 TATCT 19371 |||| Sbjct 19514 AATCT 19510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141141220485876