Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 seq4493 82.4 7e-11 >seq4 Length=1057841 Score = 93.3 bits (102), Expect = 4e-14 Identities = 331/505 (66%), Gaps = 28/505 (6%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGC-GAGACCGCCACGCTGGCCGAGCGCAT 46834 |||||| ||||||||||| |||||||| || | || ||| | ||||||||| | Sbjct 125575 AAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCT 125520 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 || || ||||| ||||| ||| | || || |||||| || |||||| |||| Sbjct 125519 CGTTGCTTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTTTG 125460 Query 46895 CATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGA 46954 |||| | ||| | |||||||| || || ||| |||||| | ||||| ||||| Sbjct 125459 GCTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCTTCTCCAACGAGCTCATCTCCCGCGA 125400 Query 46955 CGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGAC-----GCGCGTGAATGAG 47009 ||| || || ||| ||||| || || ||| ||| ||| |||| | | | Sbjct 125399 CGAGGGCCTGCACTGCGACTTCGCATGCCTCCTCTAC--GACCTCCTCCGCG-GCAAGCT 125343 Query 47010 AAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAG 47069 || | || || || | ||| || | || || || |||||||| |||| Sbjct 125342 CGATGAGACCCG----CGTCCGCGAG-ATCGTCGTTGACGCCGTCGACATCGAAAGGGAG 125288 Query 47070 TTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTC--TATGTG 47125 || | ||||| ||||| |||||||| | | |||||||||| |||| ||| | Sbjct 125287 TTCGT--CTGCGACGCGCTCCCCGTCGCTCTCGTCGGCATGAACG--GAGTCCTGATGAG 125232 Query 47126 CGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTT 47185 | | ||||| ||||| || || || || ||| | || |||||| | | || || | Sbjct 125231 CCAGTATATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGG-CTGCAAGAAGATGT 125173 Query 47186 TAATGCTCG-TAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATT 47244 | ||| ||||| || || | ||| | ||| || || |||| || ||||| | Sbjct 125172 ACAACGTCGCCAATCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGACCAACT 125113 Query 47245 TTTTCGAGAAACGAGTCGGAGAGTA 47269 | |||||||| || ||||| || || Sbjct 125112 TCTTCGAGAAGCGCGTCGGCGACTA 125088 >seq4493 Length=164055 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||| | | ||||||| || || ||||||||||| | ||| || |||||| ||||| Sbjct 95951 ATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCTTCCAGCTG 95892 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 || |||| | |||| |||||||| || || || || || || || || || || || Sbjct 95891 CTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTT 95832 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 || | | || | || || | | |||||| |||| || | || || ||||| Sbjct 95831 AGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGT 95772 Query 132100 CAGAGTTTTTATGAAAATCTGCATGACT 132127 |||||| || | ||| ||||||||| || Sbjct 95771 CAGAGTCTTGACGAAGATCTGCATGCCT 95744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476584259551920