Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq4204 558 4e-154 seq3130 390 1e-103 seq3676 324 2e-83 seq4136 174 2e-38 seq203 134 2e-26 seq4428 122 1e-22 seq2035 98.7 1e-15 seq4268 84.2 3e-11 >seq4204 Length=279751 Score = 558 bits (618), Expect = 4e-154 Identities = 719/990 (73%), Gaps = 19/990 (2%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 ||||||| | ||| |||| ||| | |||||| | || | || ||||||||||| | Sbjct 216749 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 216690 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | |||||||| ||||| || || |||||||| || | || | Sbjct 216689 GATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCC 216631 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | | || || ||||| || || || || || ||| || |||| | | ||||| |||| Sbjct 216630 CTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACA 216571 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 | || ||||||||||| || |||||| ||| || ||||| | ||||| ||||| | Sbjct 216570 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 216511 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973 | |||||||| |||||| |||| |||||| | || || || || |||| | || | | Sbjct 216510 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 216451 Query 157974 TATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 | | |||||| | | || | | |||||||| |||||||||||||| || || Sbjct 216450 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 216391 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 || | |||||||| || ||||| ||| ||||||| ||| | || Sbjct 216390 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTAC---------------TG 216346 Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158153 | || ||| | | |||||| | |||||||| |||||| |||| ||||||| | || | Sbjct 216345 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 158154 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158213 | ||||||||||| |||| ||| |||||||||| ||||| ||||||||||||||||| | Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 158214 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158273 | || || ||| | ||||| ||||| |||||||| || || || ||| ||||||||||| Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 158274 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 158332 | | || || || | | | || | ||||| ||||||| || || || | Sbjct 216165 GTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAG 216107 Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTC 158392 ||||| | || |||||||| |||||||| || || || || || || ||||| ||||| Sbjct 216106 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTT 216047 Query 158393 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158452 || || || ||||||||||| ||| || |||||||| ||||| || ||||||||| | Sbjct 216046 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 215987 Query 158453 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 158512 ||||| |||||||| || || || |||||||| || | || | || ||||| ||| Sbjct 215986 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 215927 Query 158513 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158572 ||||| ||||| ||||| |||||||| || | |||||| | || ||||| || | || Sbjct 215926 AACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAAT 215867 Query 158573 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158632 || ||||| ||| | | ||||| ||| ||||||||||||||| ||||| || ||||| Sbjct 215866 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 215807 Query 158633 GCACACAACTTCCCACTGGATCTTGCTGCT 158662 || ||||||||||| || || || |||||| Sbjct 215806 GCTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 390 bits (432), Expect = 1e-103 Identities = 505/691 (73%), Gaps = 6/691 (1%) Strand=Plus/Minus Query 157697 ACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCT 157756 ||| | |||||| | || | || ||||||||||| ||||||| ||||| || | || Sbjct 1342 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACT 1283 Query 157757 GCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCAT 157815 |||||| ||||| || || |||||||| |||| || || || || || ||||| || || Sbjct 1282 GCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTAT 1224 Query 157816 CCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 157875 || || || ||| ||||||| | | ||||| ||||| || ||||||||||| || | Sbjct 1223 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 1164 Query 157876 TCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGA 157935 ||||| ||| || ||||| | ||||| ||||| || |||||||| |||||| |||| Sbjct 1163 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 1104 Query 157936 CGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCAT 157995 |||||| | || || || || |||| | || | || | |||||| | | || | Sbjct 1103 TGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 1044 Query 157996 CTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGAT 158055 | |||||||| |||||||||||||| || |||| | |||||||| || ||||| Sbjct 1043 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 984 Query 158056 CTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTT 158115 ||| |||||||| ||||| || || || || | ||| || ||| | | |||||| | Sbjct 983 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTAT 924 Query 158116 CGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACAT 158175 |||||||| |||||| |||| ||||||| | || || ||||||||||| |||| || Sbjct 923 TGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 864 Query 158176 GCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGC 158235 | |||||||||| ||||| ||||||||||||||||| || || || ||| | ||||| || Sbjct 863 GATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 804 Query 158236 TGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACT 158295 ||| ||||||||||| || || ||| |||||| ||||| | || || | || | Sbjct 803 TGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCT-CTAGTT 745 Query 158296 CGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAG 158354 | || | ||||| ||||||| || || || | ||||| | || |||||||| | Sbjct 744 TGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGG 685 Query 158355 AAGAGACCTACAACATCGTTGCAGCCCATGG 158385 ||||||| | || || || || || ||||| Sbjct 684 AAGAGACTT--AATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 324 bits (358), Expect = 2e-83 Identities = 434/601 (72%), Gaps = 7/601 (1%) Strand=Plus/Plus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 ||||||| | ||| ||| ||| | |||||| | || | || |||| || ||| | Sbjct 288188 CTTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTT 288247 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | |||||||| ||||| || || |||||||| |||| || | Sbjct 288248 GATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCC 288306 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || || ||||| || || || || || ||| | ||| | | ||||| |||| Sbjct 288307 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACA 288366 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 | || ||||||||||| || |||||| ||| || ||||| | ||||| ||||| | Sbjct 288367 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 288426 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973 | |||||||| |||||| |||| |||||| | || || || || |||| | || | | Sbjct 288427 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 288486 Query 157974 TATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 | | |||||| | | || | | |||||||| |||||||||||||| || || Sbjct 288487 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 288546 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 || | |||||||| || ||||| ||| |||||||| ||||| || || | || | || Sbjct 288547 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 288606 Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158153 | || ||| | | |||||| | |||||||| |||||| |||| ||||||| | || | Sbjct 288607 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 288666 Query 158154 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158213 | ||||||||||| |||| ||| |||||||||| | ||| ||||||||||||||||| | Sbjct 288667 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATC 288726 Query 158214 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158273 | || | ||| | ||||| |||| || || || || || ||| ||||||||||| Sbjct 288727 CATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATG 288781 Query 158274 G 158274 | Sbjct 288782 G 288782 >seq4136 Length=310402 Score = 174 bits (192), Expect = 2e-38 Identities = 188/248 (76%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 158338 TAAG-TTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTC 158396 |||| || |||||||| |||||||| || || || || || || ||||| ||||| || | Sbjct 3278 TAAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 3219 Query 158397 GTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTG 158456 | || ||||||||||| ||| || |||||||| ||||| || ||||||||| | |||| Sbjct 3218 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 3159 Query 158457 CATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACC 158516 | |||||||| || || || |||||||| || | || | || ||||| ||||||| Sbjct 3158 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 3099 Query 158517 TGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCT 158576 | ||||| ||||| |||||||| || | ||||| | || ||||| || | || || | Sbjct 3098 TAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTT 3039 Query 158577 GGGCAGAT 158584 |||| ||| Sbjct 3038 GGGCTGAT 3031 >seq203 Length=971741 Score = 134 bits (148), Expect = 2e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 158464 TGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGG 158523 ||| || || || |||||||| || | || | || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 158524 TTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGA 158583 ||||| |||||||| || | ||||| | || ||||| || | || || ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 158584 TGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTT 158643 | | | ||||| ||| ||||||||||||||| ||||| || ||||| || |||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 158644 CCCACTGGATCTTGCTGCT 158662 ||| || || || |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq4428 Length=185154 Score = 122 bits (134), Expect = 1e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 158135 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158194 |||| ||||||| | | || ||||||||||| |||| ||| |||||||||| ||||| Sbjct 19698 GATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 19639 Query 158195 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 158254 |||||||||||||||| | || || ||| | ||||| ||||| |||||||| || || Sbjct 19638 TACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 19579 Query 158255 CTTTTCTCTGCTATGCATGG 158274 || ||| |||| ||||||| Sbjct 19578 CTATTCAGTGCTTTGCATGG 19559 >seq2035 Length=9416 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 160117 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 160176 ||||| || || || ||| | |||| || ||| | ||||| || || | ||| ||||| Sbjct 3842 TTTTC-AATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGG 3784 Query 160177 ACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGT 160236 | |||||||| | | || || ||| | ||||| ||||| || || || || Sbjct 3783 ATGAGTGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCC 3724 Query 160237 CAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTA 160296 |||| || | ||||| |||||||||||||||||||| ||||||||||| || || | Sbjct 3723 TAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTT 3664 Query 160297 TTGAATGAAGG 160307 || ||||| || Sbjct 3663 TTAAATGAGGG 3653 >seq4268 Length=1125959 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 160237 CAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTA 160296 ||||| || | ||||| |||||||||||||||||||| ||||||||||| || || || Sbjct 683086 CAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTT 683027 Query 160297 TTGAATGAAGGACTTCGTGCTTGGAT 160322 || || || || ||||||| ||||| Sbjct 683026 TTAAACGAGGGTATTCGTGCGTGGAT 683001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572991609818400