Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq4204 562 3e-155 seq3130 365 5e-96 seq3676 286 4e-72 seq4136 208 9e-49 seq203 165 9e-36 seq4428 113 5e-20 seq2035 93.3 5e-14 >seq4204 Length=279751 Score = 562 bits (622), Expect = 3e-155 Identities = 719/989 (73%), Gaps = 19/989 (2%) Strand=Plus/Minus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078 ||||| || || | ||| | ||||| ||||| || || |||||||| || | || || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCC 216630 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138 | || || || || || || ||||| || || || |||| | | ||||| ||||| Sbjct 216629 TCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAA 216570 Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 216569 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 216510 Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 216509 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 216450 Query 160259 ATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 160318 | |||||| | | || | | |||||||| |||||||||||||| | ||| Sbjct 216449 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 216390 Query 160319 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 160378 | | |||||||| || ||||| ||| ||||||| ||| | ||| Sbjct 216389 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTAC---------------TGC 216345 Query 160379 TGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160438 ||| ||| | | |||||| | |||||||| |||||| |||| ||||||| | || || Sbjct 216344 TGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 216285 Query 160439 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160498 ||||||||||| |||| ||| |||||||||| ||||| ||||| |||||||||||||| Sbjct 216284 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCC 216225 Query 160499 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 160558 || |||||| | || || ||||| |||||||| || || | ||| ||||||||| || Sbjct 216224 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 216165 Query 160559 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 160617 | || || || | | | || | ||||| ||||||| || || || | | Sbjct 216164 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 160618 GTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCG 160677 |||| | || ||||||||||||||||| || || || || || || ||||||||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 160678 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 160737 | || || |||||||||||||| || |||||||| ||||| | ||||||||| ||| Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 160738 CAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 160797 | || ||||||||||| || || |||||||||||| | ||| |||| || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 160798 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACA 160857 |||| ||||| ||||| |||||||| || | || ||| | |||||||| || | || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 160858 CCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 160917 | ||||| || | | || |||||| ||||||||||||||| ||||| || ||||| | Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 160918 CACACAACTTCCCACTCGACCTCGCTGCT 160946 | ||||||||||| || ||||| |||||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 365 bits (404), Expect = 5e-96 Identities = 507/704 (72%), Gaps = 6/704 (1%) Strand=Plus/Minus Query 159970 GGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAA 160029 || ||||| ||| | ||||| || || |||| |||||||| || ||||||| || | Sbjct 1353 GGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTA 1294 Query 160030 CTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGAC 160088 | | ||| | ||||| ||||| || || |||||||| |||| || || || || || Sbjct 1293 CCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGAT 1235 Query 160089 ATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 160148 || || || || ||||| || || ||||||| | | ||||| ||||| || |||||| Sbjct 1234 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 1175 Query 160149 GGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCC 160208 ||||| || |||| |||| || || || | ||||| || || || |||||||| Sbjct 1174 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 1115 Query 160209 GCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTC 160268 ||||| ||||||||||| | || || || || |||| | || | || | |||||| Sbjct 1114 GCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTC 1055 Query 160269 CTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATG 160328 | | || | | |||||||| |||||||||||||| | |||| | |||||| Sbjct 1054 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 995 Query 160329 CGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTC 160388 || || ||||| ||| |||||||| ||||| || || || || ||||||| ||| | Sbjct 994 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 935 Query 160389 GTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACT 160448 | |||||| | |||||||| |||||| |||| ||||||| | || || ||||||||| Sbjct 934 ATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 875 Query 160449 TTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 160508 || |||| ||| |||||||||| ||||| ||||| |||||||||||||| || |||||| Sbjct 874 TTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATG 815 Query 160509 CTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTT 160568 | || || ||||| ||||||||||| || | ||| |||||| || || | || Sbjct 814 TTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTA 755 Query 160569 ACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTT 160627 || | || | | || | ||||| ||||||| || || || | ||||| | || Sbjct 754 ACCT-CTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATT 696 Query 160628 CGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTT 160671 ||||||||||||||||| | || || || || || ||||||| Sbjct 695 TGGTCAAGAGGAAGAGACTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 286 bits (316), Expect = 4e-72 Identities = 425/600 (71%), Gaps = 7/600 (1%) Strand=Plus/Plus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 |||||| | ||| ||| | ||| | ||||| || || |||| |||| || || || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078 ||||| || || | || | ||||| ||||| || || |||||||| |||| || || Sbjct 288249 ATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCC 288307 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138 || || || || || || || ||||| || || | ||| | | ||||| ||||| Sbjct 288308 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAA 288367 Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 288368 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 288427 Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 288428 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 288487 Query 160259 ATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 160318 | |||||| | | || | | |||||||| |||||||||||||| | ||| Sbjct 288488 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 288547 Query 160319 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 160378 | | |||||||| || ||||| ||| |||||||| ||||| || || | || |||| Sbjct 288548 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 288607 Query 160379 TGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160438 ||| ||| | | |||||| | |||||||| |||||| |||| ||||||| | || || Sbjct 288608 TGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 288667 Query 160439 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160498 ||||||||||| |||| ||| |||||||||| | ||| ||||| |||||||||||||| Sbjct 288668 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCC 288727 Query 160499 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 160558 || | |||| | || || |||| || || || || | ||| ||||||||| || Sbjct 288728 ATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATGG 288782 >seq4136 Length=310402 Score = 208 bits (230), Expect = 9e-49 Identities = 195/247 (79%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 160622 TAAG-TTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTC 160680 |||| || ||||||||||||||||| || || || || || || ||||||||||| || | Sbjct 3278 TAAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 3219 Query 160681 GTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAG 160740 | || |||||||||||||| || |||||||| ||||| | ||||||||| |||| | Sbjct 3218 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 3159 Query 160741 CATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACC 160800 | ||||||||||| || || |||||||||||| | ||| |||| || ||||| ||||||| Sbjct 3158 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 3099 Query 160801 TCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCT 160860 | ||||| ||||| |||||||| || | | ||| | |||||||| || | || || | Sbjct 3098 TAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTT 3039 Query 160861 GGGCAGA 160867 |||| || Sbjct 3038 GGGCTGA 3032 >seq203 Length=971741 Score = 165 bits (182), Expect = 9e-36 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 160748 TGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGG 160807 |||||| || || |||||||||||| | ||| |||| || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 160808 TTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGA 160867 ||||| |||||||| || | | ||| | |||||||| || | || || ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 160868 CGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTT 160927 | | || |||||| ||||||||||||||| ||||| || ||||| || |||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 160928 CCCACTCGACCTCGCTGCT 160946 ||| || ||||| |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq4428 Length=185154 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 160419 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 160478 |||| ||||||| | | || ||||||||||| |||| ||| |||||||||| ||||| Sbjct 19698 GATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 19639 Query 160479 CACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCT 160538 |||| |||||||||||| | || |||||| | || || ||||| |||||||| || || Sbjct 19638 TACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 19579 Query 160539 TTGTTCTCTGCTATGCACGG 160558 | ||| |||| |||| || Sbjct 19578 CTATTCAGTGCTTTGCATGG 19559 >seq2035 Length=9416 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 162426 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 162485 ||||| || || || ||| | |||| || ||| | ||||| || || | ||| ||||| Sbjct 3842 TTTTC-AATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGG 3784 Query 162486 ACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGT 162545 | |||||||| | | || || ||||| ||||| ||||| || || || || Sbjct 3783 ATGAGTGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCC 3724 Query 162546 CAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTG 162605 |||| ||| | ||||| ||||||||||| ||||| || |||||||| || || ||| | Sbjct 3723 TAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTT 3664 Query 162606 CTCAATGAAGG 162616 | ||||| || Sbjct 3663 TTAAATGAGGG 3653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559472374036400