Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq4204 506 3e-138 seq3130 378 1e-99 seq3676 286 5e-72 seq4136 168 1e-36 seq203 123 4e-23 seq2035 100 4e-16 >seq4204 Length=279751 Score = 506 bits (560), Expect = 3e-138 Identities = 686/957 (72%), Gaps = 17/957 (2%) Strand=Plus/Minus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| |||| |||||||||||| | ||||| ||||| || || | Sbjct 216727 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACT 216668 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||| || |||||||| ||| | || || | ||| || || || || || Sbjct 216667 GCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGTAGATATTGATGGTAT 216609 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 ||||| || || || |||| | | ||||||||||| || ||||||||||| || | Sbjct 216608 TCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 216549 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || ||||| | ||||| |||||||| |||||||| || | | || Sbjct 216548 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 216489 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 || ||| | ||||| || || |||| | ||| |||| | |||||| | ||||| | Sbjct 216488 TGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 216429 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 |||||||| |||||||||||||| || ||| | |||||| | |||||||| Sbjct 216428 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 216369 Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTT 174907 ||| ||||| | |||| | || || ||| | | |||||| | Sbjct 216368 TGCTGTTGCATATTT---------------AGCTACTGCTGTTTTCTTGATTTATCCTAT 216324 Query 174908 CGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACAT 174967 |||||||| ||||| || | ||||| || || || ||||| || ||||||| || Sbjct 216323 TGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 216264 Query 174968 GTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGC 175027 | | || ||||| ||||| || |||||| | ||||| || || |||||||| || || || Sbjct 216263 GATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 216204 Query 175028 AGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACT 175087 ||||| ||||| ||||| | ||| || ||||||||||| | || |||||| | Sbjct 216203 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTT 216144 Query 175088 TGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGA 175147 || | || || ||||||| ||| || || | ||||||| || || ||||| || Sbjct 216143 GATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGA 216084 Query 175148 AGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGC 175207 |||||| ||||| || ||||| || ||||| ||||| || || || ||||||||||| || Sbjct 216083 AGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTAATCTTCCAATATGC 216024 Query 175208 TTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTAT 175267 | || |||||||| || || | ||||||||||| || || ||||| || || || || Sbjct 216023 TAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGAT 215964 Query 175268 CTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAA 175327 |||||||| || | ||| || || ||||| |||||||| || || ||||| ||||| Sbjct 215963 TTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTCAA 215904 Query 175328 CCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAG 175387 ||| ||||| | || | |||||| | || | || || ||||| ||| | | ||| | Sbjct 215903 CCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCG 215844 Query 175388 AGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||| |||||| |||||||||||||| || | ||||| ||||||||||| ||||| Sbjct 215843 TGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 215787 >seq3130 Length=1765 Score = 378 bits (418), Expect = 1e-99 Identities = 500/690 (72%), Gaps = 4/690 (1%) Strand=Plus/Minus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| |||| |||||||||||| | ||||| ||||| || || | Sbjct 1342 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACT 1283 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||| || |||||||| ||| | | || || ||||| || || || || || Sbjct 1282 GCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTAT 1224 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 ||||| || || ||||||| | | ||||||||||| || ||||||||||| || | Sbjct 1223 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 1164 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || ||||| | ||||| |||||||| |||||||| || | | || Sbjct 1163 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 1104 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 || ||| | ||||| || || |||| | ||| |||| | |||||| | ||||| | Sbjct 1103 TGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 1044 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 |||||||| |||||||||||||| || ||| | |||||| | |||||||| Sbjct 1043 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 984 Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTT 174907 ||| ||||| || || || |||||||| ||| | || || ||| | | |||||| | Sbjct 983 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTAT 924 Query 174908 CGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACAT 174967 |||||||| ||||| || | ||||| || || || ||||| || ||||||| || Sbjct 923 TGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 864 Query 174968 GTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGC 175027 | | || ||||| ||||| || |||||| | ||||| || || |||||||| || || || Sbjct 863 GATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 804 Query 175028 AGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACT 175087 ||||| ||||||||||| | ||| || || |||||||| | || |||||| | Sbjct 803 TGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTT 744 Query 175088 TGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGA 175147 || | || || ||||||| ||| || || ||||||||| || || ||||| || Sbjct 743 GATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGA 684 Query 175148 AGAGACCTATAACATCGTGGCAGCCCATGG 175177 |||||| ||| || ||||| || ||||| Sbjct 683 AGAGAC--TTAATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 286 bits (316), Expect = 5e-72 Identities = 414/582 (71%), Gaps = 7/582 (1%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| |||| |||| || |||| | ||||| ||||| || ||| | Sbjct 288210 ACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCCTACCTTATTAACT 288269 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||| || |||||||| ||| | | || || ||||| || || || || || Sbjct 288270 GCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTAT 288328 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 ||||| || || | ||| | | ||||||||||| || ||||||||||| || | Sbjct 288329 TCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 288388 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || ||||| | ||||| |||||||| |||||||| || | | || Sbjct 288389 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 288448 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 || ||| | ||||| || || |||| | ||| |||| | |||||| | ||||| | Sbjct 288449 TGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 288508 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 |||||||| |||||||||||||| || ||| | |||||| | |||||||| Sbjct 288509 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 288568 Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTT 174907 ||| ||||| || || || ||||||| ||| | || || ||| | | |||||| | Sbjct 288569 TGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTAT 288628 Query 174908 CGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACAT 174967 |||||||| ||||| || | ||||| || || || ||||| || ||||||| || Sbjct 288629 TGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 288688 Query 174968 GTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGC 175027 | | || ||||| | ||| || |||||| | ||||| || || | |||||| || || || Sbjct 288689 GATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC 288748 Query 175028 AGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTC 175069 | || || ||||| | ||| || ||||||||||| Sbjct 288749 -----TGTTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 168 bits (186), Expect = 1e-36 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 175134 TTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTG 175193 || || ||||| |||||||| ||||| || ||||| || ||||| ||||| || || || Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 175194 ATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGG 175253 ||||||||||| ||| || |||||||| || || | ||||||||||| || || ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 175254 CCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAAT 175313 || || || || || |||||||| || | ||| || || ||||| |||||||| || Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 175314 GGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCG 175373 || ||||| |||||||| ||||| | || | |||||| | || | || || ||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 175374 GAT 175376 ||| Sbjct 3033 GAT 3031 >seq203 Length=971741 Score = 123 bits (136), Expect = 4e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 175257 GTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGT 175316 || || || || |||||||| || | ||| || || ||||| |||||||| || || Sbjct 777823 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGA 777882 Query 175317 TTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGAT 175376 ||||| |||||||| ||||| | || | |||||| | || | || || ||||| ||| Sbjct 777883 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 777942 Query 175377 GTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTC 175436 | | ||| | ||| |||||| |||||||||||||| || | ||||| ||||||||| Sbjct 777943 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 778002 Query 175437 CCACTAGA 175444 || ||||| Sbjct 778003 CCTCTAGA 778010 >seq2035 Length=9416 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 176595 AATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCA 176654 ||||| |||||| | | ||||||||| | ||||| || |||| ||| | ||| | Sbjct 3837 AATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGT 3778 Query 176655 AGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAG 176714 ||||||| | | || || ||||| || || ||||| ||||| ||||| | | || Sbjct 3777 GCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGAA 3718 Query 176715 ATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACAT 176764 || | ||||| ||||||||||| ||||| ||||||||||| || || || Sbjct 3717 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATAT 3668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729888340729360