Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq4204 529 2e-145 seq3130 356 3e-93 seq3676 277 2e-69 seq4136 178 1e-39 seq203 134 2e-26 seq4428 122 1e-22 seq238 82.4 8e-11 >seq4204 Length=279751 Score = 529 bits (586), Expect = 2e-145 Identities = 712/989 (72%), Gaps = 19/989 (2%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | ||| | ||||| ||||| || || |||||||| || | || || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCC 216630 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 | || || || || || || ||||| || || || |||| | | ||||| ||||| Sbjct 216629 TCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAA 216570 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 216569 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 216510 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 216509 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 216450 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | |||||| | | || | | |||||||| ||||| |||||||| | ||| Sbjct 216449 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 216390 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | |||||||| || ||||| ||| ||||||| ||| |||| Sbjct 216389 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTT---------------AGCTACTGC 216345 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 ||| ||| | | |||||| | |||||||| |||||| |||| ||||||| | || || Sbjct 216344 TGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 216285 Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917 ||||||||||| |||| ||| |||||||||| ||||| ||||||||||||||||| || Sbjct 216284 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCC 216225 Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 || || ||| | ||||| ||||| |||||||| || || || ||| |||||||||||| Sbjct 216224 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 216165 Query 158978 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATG 159036 | || || || | | | || | ||||| ||||||| || || || | | Sbjct 216164 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096 |||||| || || ||||| ||||| || |||||||| || || || ||||||||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 | || || ||||||||||| ||| || |||||||| ||||| || ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216 |||| |||||||| || || || |||||||| || | || | || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276 |||| ||||| ||||| |||||||| || | |||||| | || ||||| || | || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336 | ||||| ||| | | |||||||| ||| ||||||||||| ||||| || ||||| | Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 159337 CACACAACTTCCCACTCGACCTTGCTGCT 159365 | ||||||||||| || ||||| |||||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 356 bits (394), Expect = 3e-93 Identities = 505/704 (72%), Gaps = 6/704 (1%) Strand=Plus/Minus Query 158389 GGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAA 158448 || ||||| ||| | ||||| || || |||| |||||||| || ||||||| || | Sbjct 1353 GGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTA 1294 Query 158449 CTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGAC 158507 | | ||| | ||||| ||||| || || |||||||| |||| || || || || || Sbjct 1293 CCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGAT 1235 Query 158508 ATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 158567 || || || || ||||| || || ||||||| | | ||||| ||||| || |||||| Sbjct 1234 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 1175 Query 158568 GGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCC 158627 ||||| || | || |||| || || || | ||||| || || || |||||||| Sbjct 1174 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 1115 Query 158628 GCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTC 158687 ||||| ||||||||||| | || || || || |||| | || | || | |||||| Sbjct 1114 GCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTC 1055 Query 158688 CTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATG 158747 | | || | | |||||||| ||||| |||||||| | ||| | |||||| Sbjct 1054 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 995 Query 158748 CGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTC 158807 || || ||||| ||| |||||||| || || || || || || ||||||| ||| | Sbjct 994 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 935 Query 158808 GTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACT 158867 | |||||| | |||||||| |||||| |||| ||||||| | || || ||||||||| Sbjct 934 ATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 875 Query 158868 TTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATG 158927 || |||| ||| |||||||||| ||||| ||||||||||||||||| || || || ||| Sbjct 874 TTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATG 815 Query 158928 CTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTT 158987 | ||||| ||||| ||||||||||| || || ||| |||||| ||||| | || Sbjct 814 TTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTA 755 Query 158988 ACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTT 159046 || | || | | || | ||||| ||||||| || || || ||||||||| || Sbjct 754 ACCT-CTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATT 696 Query 159047 CGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTT 159090 || ||||| ||||| || |||||| || || || ||||||| Sbjct 695 TGGTCAAGAGGAAGAGAC--TTAATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 277 bits (306), Expect = 2e-69 Identities = 423/600 (71%), Gaps = 7/600 (1%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||| | ||| ||| | ||| | ||||| || || |||| |||| || || || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | || | ||||| ||||| || || |||||||| |||| || || Sbjct 288249 ATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCC 288307 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || || || || ||||| || || | ||| | | ||||| ||||| Sbjct 288308 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAA 288367 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 288368 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 288427 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 288428 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 288487 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | |||||| | | || | | |||||||| ||||| |||||||| | ||| Sbjct 288488 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 288547 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | |||||||| || ||||| ||| |||||||| || || || || | || |||| Sbjct 288548 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 288607 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 ||| ||| | | |||||| | |||||||| |||||| |||| ||||||| | || || Sbjct 288608 TGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 288667 Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917 ||||||||||| |||| ||| |||||||||| | ||| ||||||||||||||||| || Sbjct 288668 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCC 288727 Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 || | ||| | ||||| |||| || || || || || ||| |||||||||||| Sbjct 288728 ATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATGG 288782 >seq4136 Length=310402 Score = 178 bits (196), Expect = 1e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 159045 TTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTG 159104 || || ||||| ||||| || |||||||| || || || ||||||||||| || || || Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 159105 ATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGG 159164 ||||||||||| ||| || |||||||| ||||| || ||||||||| | ||||| ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 159165 CCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAAC 159224 ||||| || || || |||||||| || | || | || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 159225 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCA 159284 || ||||| |||||||| || | ||||| | || ||||| || | || || ||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 159285 GAT 159287 ||| Sbjct 3033 GAT 3031 >seq203 Length=971741 Score = 134 bits (148), Expect = 2e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 159167 TGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGG 159226 ||| || || || |||||||| || | || | || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 159227 TTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGA 159286 ||||| |||||||| || | ||||| | || ||||| || | || || ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 159287 TGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTT 159346 | | | |||||||| ||| ||||||||||| ||||| || ||||| || |||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 159347 CCCACTCGACCTTGCTGCT 159365 ||| || ||||| |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq4428 Length=185154 Score = 122 bits (134), Expect = 1e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 158838 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158897 |||| ||||||| | | || ||||||||||| |||| ||| |||||||||| ||||| Sbjct 19698 GATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 19639 Query 158898 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 158957 |||||||||||||||| | || || ||| | ||||| ||||| |||||||| || || Sbjct 19638 TACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 19579 Query 158958 CTTTTCTCTGCTATGCATGG 158977 || ||| |||| ||||||| Sbjct 19578 CTATTCAGTGCTTTGCATGG 19559 >seq238 Length=82349 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 159947 GGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACT 160006 || |||||||| || | || |||| ||||||| | ||| | || |||||| |||| Sbjct 49492 GGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACA 49433 Query 160007 GGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTG-AGGG 160065 || || ||||| | ||| ||||||||||||||| | || ||||||||| | | ||| Sbjct 49432 GGGACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 49373 Query 160066 TGCAAACTTTCTTA 160079 ||||| ||||||| Sbjct 49372 TGCAA--TTTCTTA 49361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552442371429760