Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq4204 556 2e-153 seq3130 389 5e-103 seq3676 318 7e-82 seq4136 181 1e-40 seq203 132 6e-26 seq4428 120 4e-22 seq2035 93.3 5e-14 >seq4204 Length=279751 Score = 556 bits (616), Expect = 2e-153 Identities = 719/989 (73%), Gaps = 19/989 (2%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| |||| | || ||| | || | || ||||||||||| || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | |||||||| ||||| || || | || ||| | |||| || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCC 216630 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 || || |||||||| || || ||||| || || || |||| | | ||||||||||| Sbjct 216629 TCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAA 216570 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || ||||||||||| || | || | ||| || || || | ||||| ||||| || Sbjct 216569 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 216510 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||||||| | || || || || |||| | || | || Sbjct 216509 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 216450 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | |||||||| |||||||||||||| || ||| Sbjct 216449 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 216390 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| ||||||||||| ||||| ||||||||| | | ||| |||| Sbjct 216389 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT---------TAGCTACTGCT----- 216344 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | | |||||| | |||||||| ||||||||||| ||||||| | || || Sbjct 216343 -GTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 216285 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 ||||||||||| |||| ||| |||||||||| ||||| ||||||||||||||||| || Sbjct 216284 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCC 216225 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || || ||| | ||||| ||||| |||||||| || || || ||| ||||||||| || Sbjct 216224 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 216165 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATG 179518 | || || || | | ||| || | ||||| ||||| | || || || | | Sbjct 216164 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578 |||| | || || ||||| |||||||| ||||| || || || || ||||| ||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638 | || || |||||||||||||| ||||||||||| || ||||| ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCA 179698 |||| ||||| || || || || |||||||||||| | || | || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 179699 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACA 179758 |||| ||||| ||||| |||||||| || | ||||| | ||||| || || |||| | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 179759 CATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACG 179818 | ||||| || | | |||||||| | | ||||||||||| ||||| || ||||| | Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 179819 CACACAACTTCCCACTCGACCTTGCTGCT 179847 | ||||||||||| || ||||| |||||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 389 bits (430), Expect = 5e-103 Identities = 505/692 (73%), Gaps = 6/692 (1%) Strand=Plus/Minus Query 178881 CACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGC 178940 |||| | || ||| | || | || ||||||||||| ||||||| ||||| || | | Sbjct 1343 CACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGAC 1284 Query 178941 TGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCA 178999 ||||||| ||||| || || | || ||| | ||||| ||||| || |||||||| || | Sbjct 1283 TGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTA 1225 Query 179000 TCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 179059 | ||||| || || ||||||| | | ||||||||||| || ||||||||||| || Sbjct 1224 TTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTA 1165 Query 179060 TCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCG 179119 | || | ||| || || || | ||||| ||||| || |||||||| ||||| | | Sbjct 1164 TTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 1105 Query 179120 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCA 179179 |||||||| | || || || || |||| | || | || | |||||| | | || Sbjct 1104 ATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 1045 Query 179180 TCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGA 179239 | | |||||||| |||||||||||||| || |||||| ||||||||||| |||| Sbjct 1044 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 985 Query 179240 TCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTT 179299 | ||||||||| || || || || || ||||| | ||| || ||| | | |||||| Sbjct 984 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTA 925 Query 179300 TCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACA 179359 | |||||||| ||||||||||| ||||||| | || || ||||||||||| |||| | Sbjct 924 TTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 865 Query 179360 TGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG 179419 || |||||||||| ||||| ||||||||||||||||| || || || ||| | ||||| | Sbjct 864 TGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 805 Query 179420 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGC 179479 |||| ||||||||||| || || ||| |||||| || || | || || | || | Sbjct 804 CTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCT-CTAGT 746 Query 179480 TTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAA 179538 ||| || | ||||| ||||| | || || || ||||||| | || || ||||| Sbjct 745 TTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAG 686 Query 179539 GAAGAGACCTATAACATCGTCGCAGCACATGG 179570 |||||||| ||| || || || || ||||| Sbjct 685 GAAGAGAC--TTAATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 318 bits (352), Expect = 7e-82 Identities = 432/600 (72%), Gaps = 7/600 (1%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| ||| |||| | || ||| | || | || |||| || ||| || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | |||||||| ||||| || || | || ||| | ||||| || Sbjct 288249 ATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCC 288307 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || | ||| | | ||||||||||| Sbjct 288308 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAA 288367 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || ||||||||||| || | || | ||| || || || | ||||| ||||| || Sbjct 288368 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 288427 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||||||| | || || || || |||| | || | || Sbjct 288428 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 288487 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | |||||||| |||||||||||||| || ||| Sbjct 288488 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 288547 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| ||||||||||| ||||| ||||||||| || || || || || | ||| | ||| Sbjct 288548 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 288607 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | | |||||| | |||||||| ||||||||||| ||||||| | || || Sbjct 288608 TGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 288667 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 ||||||||||| |||| ||| |||||||||| | ||| ||||||||||||||||| || Sbjct 288668 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCC 288727 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || | ||| | ||||| |||| || || || || || ||| ||||||||| || Sbjct 288728 ATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATGG 288782 >seq4136 Length=310402 Score = 181 bits (200), Expect = 1e-40 Identities = 189/247 (77%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 179523 TAAG-TTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTC 179581 |||| || || ||||| |||||||| ||||| || || || || ||||| ||||| || | Sbjct 3278 TAAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 3219 Query 179582 GTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTG 179641 | || |||||||||||||| ||||||||||| || ||||| ||||||||| | |||| Sbjct 3218 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 3159 Query 179642 CGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACC 179701 | ||||| || || || || |||||||||||| | || | || ||||| ||||||| Sbjct 3158 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 3099 Query 179702 TCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACAT 179761 | ||||| ||||| |||||||| || | |||| | ||||| || || |||| || | Sbjct 3098 TAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTT 3039 Query 179762 GGGCGGA 179768 |||| || Sbjct 3038 GGGCTGA 3032 >seq203 Length=971741 Score = 132 bits (146), Expect = 6e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 179650 GTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGT 179709 || || || || |||||||||||| | || | || ||||| |||||||| ||||| Sbjct 777823 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGA 777882 Query 179710 TTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGAC 179769 ||||| |||||||| || | |||| | ||||| || || |||| || ||||| || Sbjct 777883 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 777942 Query 179770 GTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTC 179829 | | |||||||| | | ||||||||||| ||||| || ||||| || ||||||||| Sbjct 777943 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 778002 Query 179830 CCACTCGACCTTGCTGCT 179847 || || ||||| |||||| Sbjct 778003 CCTCTAGACCTAGCTGCT 778020 >seq4428 Length=185154 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 179319 TGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGA 179378 ||||| ||||||| | | || ||||||||||| |||| ||| |||||||||| ||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 179379 ACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATC 179438 |||||||||||||||| | || || ||| | ||||| ||||| |||||||| || || Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 179439 TCTTTTCTCTGCTATGCACGG 179459 || ||| |||| |||| || Sbjct 19579 CCTATTCAGTGCTTTGCATGG 19559 >seq2035 Length=9416 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 180759 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 180818 ||||| || || || ||| | |||| || ||| | ||||| || || | ||| ||||| Sbjct 3842 TTTTC-AATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGG 3784 Query 180819 ACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGT 180878 | |||||||| | | || || ||||| ||||| ||||| || || || || Sbjct 3783 ATGAGTGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCC 3724 Query 180879 CAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTA 180938 | || ||| | ||||| ||||||||||| || ||||| ||||||||||| || || | Sbjct 3723 TAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTT 3664 Query 180939 TTGAATGAAGG 180949 || ||||| || Sbjct 3663 TTAAATGAGGG 3653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610295101119360