Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2113 118 1e-21 seq603 93.3 6e-14 >seq2113 Length=1451509 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | |||| |||||| | ||| | || | |||||| |||| ||| || Sbjct 1176537 TCCACCTTGATCAACATATCGGGCAGTATCATTGAAAACACGCAGCATAGGAACAATTCC 1176596 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | ||||||||||| |||||| || || |||| || ||||| || || Sbjct 1176597 ATTGGAGGTTCCATTTGTTCCTCGAATATAGCTCCCAGTTGCACGGATATTGTGAACTGA 1176656 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| || ||||| || ||| || | |||||| |||| || |||||||| Sbjct 1176657 TACACCAATCCCTCCAGCAGATTTGCTTATAACAGCACATTCCTTCAGAGTATCATATAT 1176716 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||| |||||| ||||| | ||| ||||||||| Sbjct 1176717 TCCCTCGATGCTGTCATCTTTCATGCAGATAAGGAAACAGCTA 1176759 >seq603 Length=994148 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 841774 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 841833 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || |||||||| |||||||| || ||||| ||| || ||||| || || | Sbjct 841834 GCCCGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGATCCCGAGAAAA 841892 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 841893 AGATGCCCTCGAC 841905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686869972480080