Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2624 111 1e-19 seq3577 109 5e-19 seq891 109 5e-19 seq4294 105 6e-18 seq2778 102 7e-17 seq1848 98.7 8e-16 seq192 96.9 3e-15 seq4493 89.7 4e-13 seq4197 89.7 4e-13 >seq2624 Length=565299 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| |||| || ||||| || || Sbjct 25341 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 25400 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 25401 GCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 25460 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| || ||||| || || || || | ||||| ||||| || Sbjct 25461 ACATTGTCGATCGTGTCTGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 25520 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || |||||||| |||||| || Sbjct 25521 TTGACAAAGATCTGCATACCT 25541 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || ||||| ||||| || || | |||| | || || ||||| || || Sbjct 25569 GTAGACTCCTTCTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 25628 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | |||||| || || |||||| ||| Sbjct 25629 GCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTC 25688 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||||| || ||| || || || || || | ||||| |||| || Sbjct 25689 ACGTTGTCGATCGTGTCTGAGGATTCGACCTCAAGCGTAATTGTCTTGCCGGTCAAGGTC 25748 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 25749 TTGACAAAGATCTGCAT 25765 >seq3577 Length=483236 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 183952 GCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 183893 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| | || |||||||| || |||||| | ||||| ||||| || |||||||| Sbjct 183892 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 183833 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||||| || || || Sbjct 183832 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGGACTCCAC 183773 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||||||||| || ||||| ||||| ||||| Sbjct 183772 CTCCAACGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 183725 >seq891 Length=1582050 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | ||| || || || || || ||||||||| Sbjct 1149466 GCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 1149525 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| | || |||||||| || |||||| | ||||| ||||| || |||||||| Sbjct 1149526 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 1149585 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | || || || Sbjct 1149586 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGGACTCCAC 1149645 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||||||||| || ||||| ||||| ||||| Sbjct 1149646 CTCCAACGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1149693 >seq4294 Length=230714 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | |||| || | || || || || || || ||||||||| Sbjct 45207 GCCGCCGCGCAGGCGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 45148 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | ||||| ||||| || |||||| | ||||||||||| || |||||||| Sbjct 45147 GAGCGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGG 45088 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | || || || Sbjct 45087 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 45028 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || ||||| || ||||| ||||| ||||| Sbjct 45027 CTCCAGCGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 44980 >seq2778 Length=1391004 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| || || |||| ||||||| ||||| || || Sbjct 175311 GTGGACTCCTTCTGGATGTTGTAGTCAG-CAAGTGTGCGTCCGTCTTCAAGCTGCTTGCC 175369 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| |||||||| || | ||||| || || ||||||| || Sbjct 175370 AGCGAAGATGAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 175429 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | || || | || ||||| || || ||||| | ||||| || || || Sbjct 175430 GACGTTGTCAATGGTATCCGAGGACTCAACCTCGAGGGTTATGGTCTTGCCAGTGAGGGT 175489 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 175490 CTTCACAAAGATCTGCAT 175507 >seq1848 Length=11040 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| | || || |||||||| || Sbjct 5602 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGTTTGCCA 5543 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | |||||| ||||| |||||| ||| Sbjct 5542 GCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGGATCTTAGCTTTG 5483 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || |||| ||||| |||| || Sbjct 5482 ACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTC 5423 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| || ||||| Sbjct 5422 TTCACAAAAATCTGCAT 5406 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || ||||| || ||| Sbjct 6286 GTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCG 6227 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 6226 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 6167 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || |||| ||||| |||| ||| Sbjct 6166 ACATTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGTCAAAGTC 6107 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| || ||||| Sbjct 6106 TTCACAAAAATCTGCAT 6090 >seq192 Length=981986 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | |||| || | || || || || || || || |||||| Sbjct 849024 GCCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGC 848965 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | || | || || ||||| || |||||| | ||||||||||| || |||||||| Sbjct 848964 GAGCGTTCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGG 848905 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | || || || Sbjct 848904 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 848845 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || |||||||| || ||||| ||||| ||||| Sbjct 848844 CTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 848797 >seq4493 Length=164055 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| | ||||| ||||| || ||| Sbjct 95944 GTTGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 95885 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | |||||| || || |||||| || Sbjct 95884 GCAAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTAGCCTTG 95825 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || |||| ||||| |||||||| Sbjct 95824 ACGTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGAGTC 95765 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 95764 TTGACGAAGATCTGCAT 95748 >seq4197 Length=262831 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || |||||||| || Sbjct 76107 GTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGTTTGCCT 76048 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | |||||| || || |||||| || Sbjct 76047 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTAGCCTTG 75988 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||||| || || || || | ||||| |||| || Sbjct 75987 ACGTTGTCAATGGTGTCCGAGGACTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 75928 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 75927 TTCACGAAGATCTGCAT 75911 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| | || || ||||| || || Sbjct 76335 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 76276 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||||||||| || || || | |||||| || || |||||| ||| Sbjct 76275 GCGAAGATGAGACGCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTAGCCTTC 76216 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || || || || || || || | ||||| ||||| || Sbjct 76215 ACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCTTGCCAGTCAGGGTC 76156 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| || ||||| Sbjct 76155 TTGACAAAAATCTGCAT 76139 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||| || | | |||| | || || ||||| ||||| Sbjct 76791 GTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 76732 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 76731 GCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTC 76672 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | |||||| |||| || Sbjct 76671 ACGTTGTCAATTGTGTCAGACGACTCAACCTCCAGGGTGATTGTTTTGCCGGTCAAGGTC 76612 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 76611 TTCACAAAGATCTGCAT 76595 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || |||| | || || ||||| || || Sbjct 75879 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCAAGCTGCTTGCCA 75820 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || |||||| || Sbjct 75819 GCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 75760 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 75759 ACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGTGTC 75700 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 75699 TTCACAAAGATCTGCAT 75683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424910981068464