Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq2624 111 1e-19
seq3577 109 5e-19
seq891 109 5e-19
seq4294 105 6e-18
seq2778 102 7e-17
seq1848 98.7 8e-16
seq192 96.9 3e-15
seq4493 89.7 4e-13
seq4197 89.7 4e-13
>seq2624
Length=565299
Score = 111 bits (122), Expect = 1e-19
Identities = 145/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || |||||||| || | |||| |||| || ||||| || ||
Sbjct 25341 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 25400
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| ||||||||||||| || ||||| || | ||||| || || ||||||| |||
Sbjct 25401 GCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 25460
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||||| || ||||| || || || || | ||||| ||||| ||
Sbjct 25461 ACATTGTCGATCGTGTCTGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 25520
Query 27231 TTCACAAAGATTTGCATAGCT 27251
|| |||||||| |||||| ||
Sbjct 25521 TTGACAAAGATCTGCATACCT 25541
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || ||||| ||||| || || | |||| | || || ||||| || ||
Sbjct 25569 GTAGACTCCTTCTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 25628
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | ||||||||||| || ||||| || | |||||| || || |||||| |||
Sbjct 25629 GCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTC 25688
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||||| || ||| || || || || || | ||||| |||| ||
Sbjct 25689 ACGTTGTCGATCGTGTCTGAGGATTCGACCTCAAGCGTAATTGTCTTGCCGGTCAAGGTC 25748
Query 27231 TTCACAAAGATTTGCAT 27247
|| |||||||| |||||
Sbjct 25749 TTGACAAAGATCTGCAT 25765
>seq3577
Length=483236
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| ||||| | || | |||| || | || || || || || || |||||||||
Sbjct 183952 GCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 183893
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| | |||| | || |||||||| || |||||| | ||||| ||||| || ||||||||
Sbjct 183892 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 183833
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || ||||||| |||| | | || | ||||||| || || ||
Sbjct 183832 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGGACTCCAC 183773
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | || || | ||||||||||| || ||||| ||||| |||||
Sbjct 183772 CTCCAACGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 183725
>seq891
Length=1582050
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| ||||| | || | |||| || | ||| || || || || || |||||||||
Sbjct 1149466 GCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 1149525
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| | |||| | || |||||||| || |||||| | ||||| ||||| || ||||||||
Sbjct 1149526 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 1149585
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || ||||||| |||| | | || | ||||| | || || ||
Sbjct 1149586 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGGACTCCAC 1149645
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | || || | ||||||||||| || ||||| ||||| |||||
Sbjct 1149646 CTCCAACGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1149693
>seq4294
Length=230714
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| ||||||| || | |||| || | || || || || || || |||||||||
Sbjct 45207 GCCGCCGCGCAGGCGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 45148
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| |||| | ||||| ||||| || |||||| | ||||||||||| || ||||||||
Sbjct 45147 GAGCGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGG 45088
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || ||||||| |||| | | || | ||||| | || || ||
Sbjct 45087 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 45028
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | || || ||||| || ||||| ||||| |||||
Sbjct 45027 CTCCAGCGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 44980
>seq2778
Length=1391004
Score = 102 bits (112), Expect = 7e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109
|| || || || || || |||||||| || || |||| ||||||| ||||| || ||
Sbjct 175311 GTGGACTCCTTCTGGATGTTGTAGTCAG-CAAGTGTGCGTCCGTCTTCAAGCTGCTTGCC 175369
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
||| | ||||||||||| |||||||| || | ||||| || || ||||||| ||
Sbjct 175370 AGCGAAGATGAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTT 175429
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
| | | || | || || | || ||||| || || ||||| | ||||| || || ||
Sbjct 175430 GACGTTGTCAATGGTATCCGAGGACTCAACCTCGAGGGTTATGGTCTTGCCAGTGAGGGT 175489
Query 27230 TTTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 175490 CTTCACAAAGATCTGCAT 175507
>seq1848
Length=11040
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| | | |||| | || || |||||||| ||
Sbjct 5602 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGTTTGCCA 5543
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| || || || || | |||||| ||||| |||||| |||
Sbjct 5542 GCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGGATCTTAGCTTTG 5483
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | || || || || || || |||| ||||| |||| ||
Sbjct 5482 ACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTC 5423
Query 27231 TTCACAAAGATTTGCAT 27247
|||||||| || |||||
Sbjct 5422 TTCACAAAAATCTGCAT 5406
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || |||||||| || | |||| | || || ||||| || |||
Sbjct 6286 GTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCG 6227
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||
Sbjct 6226 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 6167
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | | || || || || || |||| ||||| |||| |||
Sbjct 6166 ACATTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGTCAAAGTC 6107
Query 27231 TTCACAAAGATTTGCAT 27247
|||||||| || |||||
Sbjct 6106 TTCACAAAAATCTGCAT 6090
>seq192
Length=981986
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| ||||||| || | |||| || | || || || || || || || ||||||
Sbjct 849024 GCCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGC 848965
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| | || | || || ||||| || |||||| | ||||||||||| || ||||||||
Sbjct 848964 GAGCGTTCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGG 848905
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || ||||||| |||| | | || | ||||| | || || ||
Sbjct 848904 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 848845
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | || |||||||| || ||||| ||||| |||||
Sbjct 848844 CTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 848797
>seq4493
Length=164055
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || |||||||| | | |||| | ||||| ||||| || |||
Sbjct 95944 GTTGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 95885
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | ||||||||||| || ||||| || | |||||| || || |||||| ||
Sbjct 95884 GCAAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTAGCCTTG 95825
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | | || || || || || |||| ||||| ||||||||
Sbjct 95824 ACGTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGAGTC 95765
Query 27231 TTCACAAAGATTTGCAT 27247
|| || ||||| |||||
Sbjct 95764 TTGACGAAGATCTGCAT 95748
>seq4197
Length=262831
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || |||||||| || | |||| | || || |||||||| ||
Sbjct 76107 GTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGTTTGCCT 76048
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | ||||||||||| || ||||| || | |||||| || || |||||| ||
Sbjct 76047 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTAGCCTTG 75988
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | || ||||| || || || || | ||||| |||| ||
Sbjct 75987 ACGTTGTCAATGGTGTCCGAGGACTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 75928
Query 27231 TTCACAAAGATTTGCAT 27247
||||| ||||| |||||
Sbjct 75927 TTCACGAAGATCTGCAT 75911
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| || | |||| | || || ||||| || ||
Sbjct 76335 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 76276
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | |||||||||||||| || || || | |||||| || || |||||| |||
Sbjct 76275 GCGAAGATGAGACGCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTAGCCTTC 76216
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | || || || || || || || | ||||| ||||| ||
Sbjct 76215 ACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCTTGCCAGTCAGGGTC 76156
Query 27231 TTCACAAAGATTTGCAT 27247
|| ||||| || |||||
Sbjct 76155 TTGACAAAAATCTGCAT 76139
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || |||||||| || | | |||| | || || ||||| |||||
Sbjct 76791 GTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 76732
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || |||||||| || ||||| || | ||||| || || ||||||| |||
Sbjct 76731 GCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTC 76672
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | | ||||| || || || || | |||||| |||| ||
Sbjct 76671 ACGTTGTCAATTGTGTCAGACGACTCAACCTCCAGGGTGATTGTTTTGCCGGTCAAGGTC 76612
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 76611 TTCACAAAGATCTGCAT 76595
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| || |||| | || || ||||| || ||
Sbjct 75879 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCAAGCTGCTTGCCA 75820
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| || || || || | ||||| || || |||||| ||
Sbjct 75819 GCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 75760
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | || ||||| || || || || | ||||| || || ||
Sbjct 75759 ACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGTGTC 75700
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 75699 TTCACAAAGATCTGCAT 75683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424910981068464
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