Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq603 104 7e-17 seq4 86.0 2e-11 >seq603 Length=994148 Score = 104 bits (114), Expect = 7e-17 Identities = 128/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757 |||||| |||||| |||||||| || || ||||| || | || ||| ||| | | Sbjct 841937 GCTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTT-TTTCTCGGGATCC 841879 Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 || | ||||||||||| | || |||||||| || |||| || || ||||| ||| Sbjct 841878 TTCTGCGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCGGGCCTCACCTTCTCCAAC 841819 Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 || || ||| || |||||||| |||| |||||||||||||| || |||||| Sbjct 841818 GAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC 841765 >seq4 Length=1057841 Score = 86.0 bits (94), Expect = 2e-11 Identities = 124/174 (71%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757 |||||| |||||| || || ||||| || ||||| || | || || ||| || Sbjct 125535 GCTTCGCCGAGCGCCTCGTTGCTTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCT 125476 Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 | || ||||||| ||| | || ||||| || || |||| ||||| ||||| ||| Sbjct 125475 TCTGCG-CCATCTTTTGGCTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCTTCTCCAAC 125417 Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 || || ||| || |||||||| |||| ||||||||||| || || |||||| Sbjct 125416 GAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCATGCCTCCTCTAC 125363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588243974790290