Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq4423 109 7e-19 seq4414 109 7e-19 seq447 100 4e-16 seq4413 86.0 8e-12 >seq4 Length=1057841 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 125387 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGACCCGGCATGAGGCC 125446 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | |||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 125447 GCGCTTCTTAAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 125506 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || |||| ||||| ||||||||| Sbjct 125507 GGCGAAAGCAACGAGGCGCTCGGCGAAG 125534 >seq4423 Length=186807 Score = 109 bits (120), Expect = 7e-19 Identities = 197/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | ||| | || ||| | |||||| | | || ||||| ||| Sbjct 100488 TCAAAACGTCCAGGCCTAAGTAAAGCTGAATCCAAGATATCAGCCCTGTTGGTGGCAGCA 100429 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 | ||| | || ||||| | ||||| ||||||||||| || || || || || | Sbjct 100428 ACAACAATTATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGGTTCAAA 100369 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626 || || || || ||||||||| | ||||||| || || | |||| | || Sbjct 100368 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 100315 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || ||| | | || Sbjct 100314 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 100255 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| ||||| ||||||||||||||||| Sbjct 100254 AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAA 100208 >seq4414 Length=189502 Score = 109 bits (120), Expect = 7e-19 Identities = 197/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | ||| | || ||| | ||| || | | || ||||| ||| Sbjct 71726 TCAAAACGTCCAGGTCTAAGTAAAGCTGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 71667 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || || || || || | Sbjct 71666 ATAACAATTATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGGTTCAAA 71607 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626 || || || || ||||||||| | ||||||| || || | |||| | || Sbjct 71606 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 71553 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || ||| | | || Sbjct 71552 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 71493 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| ||||| ||||||||||||||||| Sbjct 71492 AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAA 71446 >seq447 Length=1725674 Score = 100 bits (110), Expect = 4e-16 Identities = 214/318 (67%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||| ||||||||||| || | | || || || || || || |||||||||||| | Sbjct 1584023 CAAATCCATCCATCTCCGTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCC- 1584081 Query 11598 GCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | | | | || |||| || ||| | || || |||||||| ||||||||||| ||||| Sbjct 1584082 -CCTCCGAGTCCTGCACCACGCTGCCTCCCGACGGCATCAATTTCATCAATGAACACAAT 1584140 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || | ||| | || || ||||| | ||||| || |||||||| Sbjct 1584141 GCACGGCGCCTTGGCCTTGGCCTTCTCGAACAGATCCCTGACCCTGGACGCGCCCACACC 1584200 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 || |||| ||| || || | | ||| | ||| || ||| || || | || || Sbjct 1584201 GACGAACAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCC 1584260 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 |||| ||| || || || |||||||| || || || ||| || | || ||| || Sbjct 1584261 AGCGACGGCACGCGCCAGCAGGGTCTTGCCAGTTCCGGGCGGGCCAACCAGCAGGCATCC 1584320 Query 11836 TCGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 1584321 CTTGGGGATCTTGGCCCC 1584338 >seq4413 Length=1061291 Score = 86.0 bits (94), Expect = 8e-12 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || ||||||||||| |||||||||| ||| ||| | ||| | || Sbjct 3841 TGAGGCCTTGGAGTGCCAGCATTGAAAAGGGTTGGTGATGCATGAGTAAACCAGCGCTGA 3782 Query 112001 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| ||| ||||| ||| || |||| ||||| || ||| ||| || || || | Sbjct 3781 GACATCATGTGGTATGTTCTGATAG-CAGACTCAATATCATCCTTGTGAATCCCAATGGA 3723 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGA 112117 || | ||| | ||| | |||||| |||||| | | ||| | | | || | ||| Sbjct 3722 AACTCTCATTAGCATATGCTGTGGTCTTTCCACAACCTTTCCACCAA--CTTTCAACAGA 3665 Query 112118 T-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | || || |||||||||| || | |||||| || Sbjct 3664 TAAGATC-TCTCAAGGGTCTTAAAACCAAAATA 3633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627996500491200