Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-27 seq603 134 2e-26 seq447 120 4e-22 seq697 98.7 1e-15 seq3829 89.7 6e-13 >seq4 Length=1057841 Score = 136 bits (150), Expect = 5e-27 Identities = 311/455 (68%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 125088 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCATC 125147 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || || || ||| | || | || ||| || | | |||| || || Sbjct 125148 CAGTCGAAGGGATTGGCGACGTTGTACATCTTCTTGCAG-CCGAGCGCCATGAGCAGGCG 125206 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| || |||| |||| | |||||| |||| ||| | || Sbjct 125207 GTCGGCGACGAACTCGATATACTGGCTCATCAGGACTCCGTTCATGCCGACGAGAGCGAC 125266 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || | || ||||| || || || ||||| || Sbjct 125267 G-GGGAGCGCGTCGCAGACGAACTCCCTTTCGATGTCGACGGCGTCAACGACGATCTCGC 125325 Query 129966 GAATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAA 130019 | | | ||||| | || | | ||| | | ||| | || ||| || | | | Sbjct 125326 GGACGCGGGTCTCATCG--AGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CATG-CGA 125379 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| || |||||||| ||||||||||| || || |||||| ||||| |||| Sbjct 125380 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGACCCGGCA 125439 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||| | ||| || || || || || ||||| ||||||||||| |||| Sbjct 125440 TGAGGCCGCGCTTCTTAAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 125499 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || || ||||| |||| ||| ||||| || ||| Sbjct 125500 CGACGCAGGCGAAAGCAACGAGGCGCTCGGCGAAG 125534 >seq603 Length=994148 Score = 134 bits (148), Expect = 2e-26 Identities = 307/452 (68%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || |||||||||||||| || ||||| || | || | ||| |||||| Sbjct 841490 TAGTCGCCGACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 841549 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| | ||| | || | || ||| || | | | ||||| || Sbjct 841550 CAGTCGAAGGGGTTGGTGACGTTGTACATCTTCTTGCAG-CCGAGCGCCATTAGGAGGCG 841608 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| ||| |||||| |||| ||| | || Sbjct 841609 GTCAGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 841668 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||| ||||| ||| ||| | |||| ||||| || ||||| ||||| || Sbjct 841669 G-GGGAGAGCGTCGCAGACGAAGTTCCTCTCGATGTCGACGGCTTCGGCGACGATTGCAC 841727 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAACT 130022 | | | || | || | | ||| | | ||| | || ||| || ||| || | Sbjct 841728 GGACGCGGGCCTCGTCAAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAAGT 841784 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| || |||||||| ||||||||||| || || |||||| || || ||||||| Sbjct 841785 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 841844 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | || |||||||| | |||||| || || || || || || ||||| ||||| ||||| | Sbjct 841845 GGCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCCGAGAAAAAGATGCCCTCGA 841904 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || ||||| || | || ||||| || ||| Sbjct 841905 CGCAGGCGAAGGCGACTAGGCGCTCGGCGAAG 841936 >seq447 Length=1725674 Score = 120 bits (132), Expect = 4e-22 Identities = 255/379 (67%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 |||| || || ||||||||| | |||||||| || || || |||| || | ||| Sbjct 1583923 ACGGCGACCTGACGATCAAACCTCCCTGGGCGAAGAAGCGCTGCGTCCAGCACATCTGGC 1583982 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| || || |||| |||| || || | | |||| ||||||||||| ||| Sbjct 1583983 CTGTTTGTTGCGGCGAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTC 1584042 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGC 14228 ||||| || |||||||| || || | |||||||| | | | | | || |||| | Sbjct 1584043 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCC--CCCTCCGAGTCCTGCACCAC 1584100 Query 14229 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGG 14288 | ||| | |||||||| ||||||||||| ||||| || || || || || | || Sbjct 1584101 GCTGCCTCCCGACGGCATCAATTTCATCAATGAACACAATGCACGGCGCCTTGGCCTTGG 1584160 Query 14289 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 | || || | ||| | || || || || ||||| || |||| ||| || || | Sbjct 1584161 CCTTCTCGAACAGATCCCTGACCCTGGACGCGCCCACACCGACGAACAGCTCGACGAACT 1584220 Query 14349 TGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 || ||||| || || |||||| ||| | || || |||| ||| || || || | Sbjct 1584221 CGGAGGCGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCCAGCGACGGCACGCGCCAGCA 1584280 Query 14409 GGGTCTTCCCCGTCCCTGG 14427 ||||||| || || || || Sbjct 1584281 GGGTCTTGCCAGTTCCGGG 1584299 >seq697 Length=35695 Score = 98.7 bits (108), Expect = 1e-15 Identities = 241/363 (66%), Gaps = 12/363 (3%) Strand=Plus/Minus Query 11847 CCACAAAATGAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCG 11906 || || |||||| | || |||||| | || || || || | || ||| ||||| || Sbjct 35069 CCGCAGAATGAGAACACCCCCTTCCACCCGCGCTCGCCTTACGCCGCCTCCAAGGTCGCC 35010 Query 11907 GCACATTGGCT---CGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGT 11963 ||||| ||| ||| || ||||| || |||| || ||||| || ||| |||| Sbjct 35009 GCACACTGGTATACCGTCAAC---TACCGCGAGGCCTACGGCCTCTTCGCCTGCAATGGT 34953 Query 11964 ATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC 12023 | ||||||||||||||||| ||||| || ||| | | ||||| || ||||||||| Sbjct 34952 GTGCTCTTCAACCACGAGTCGCCCCGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACC 34893 Query 12024 GATGGTATCAAACAAATCGTGGCGGGT---GAGAGGGAGTTCATTGAATTGGGGAACCTC 12080 || ||| | ||| || ||| ||| || || | | || |||||| Sbjct 34892 CGTGCCATCGGCCGCATCAAGGTCGGTCTCCAGACCAAGGTCTT---CCTTGGCAACCTC 34836 Query 12081 AACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTT 12140 ||||| |||||||||| |||| |||||| || || || ||||||| | | || Sbjct 34835 TCCGCCGCCCGGGACTGGGGCTTTGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTG 34776 Query 12141 CAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAG 12200 || || || || | | || || || || || || | |||| | ||| | || |||| Sbjct 34775 CAGCAGGACAAGCCCGGTGACTACGTTGTTGCCACCGAGGAGTCCCACACTGTTGAGGAG 34716 Query 12201 TTC 12203 ||| Sbjct 34715 TTC 34713 >seq3829 Length=445942 Score = 89.7 bits (98), Expect = 6e-13 Identities = 248/378 (66%), Gaps = 2/378 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||||||| | ||||| || || || || ||| || | ||| Sbjct 322180 ACGGTGACCTGACGATCAAACCTCCCTGGCCGAAGAAGCGCTGAGTCCAGCACATCTGGC 322239 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| || || |||| |||| || || | | |||| || |||||||| ||| Sbjct 322240 CTGTTTGTTGCGGCGAGCACAATGACACCACTGTTCCCGGCAAATCCGTCCATCTCCGTC 322299 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT-CGCAGGCATACCACCCGCACTGCG 14229 ||||| || || ||||| || || | |||||||| | | | | | || || | || Sbjct 322300 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCTGCGCCACG 322358 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| | |||||||| ||||||||||| ||||| ||||| || || || | ||| Sbjct 322359 CTGCCTCCCGACGGCATCAATTTCATCAATGAACACGATGCACGGCGCCTTGGCCTTGGC 322418 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || || | || | || || || || ||||| || |||| ||| || || | Sbjct 322419 CTTCTCGAACAGGTCCCTGACCCTGGACGCGCCCACACCGACGAACAGCTCGACGAACTC 322478 Query 14350 GGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 | |||| || || ||| || ||| | || || |||| ||| || || || || Sbjct 322479 CGACGCGGCGCAGGAGAAGAACGGTACGCCGGCCTCCCCAGCGACGGCACGCGCCAGCAG 322538 Query 14410 GGTCTTCCCCGTCCCTGG 14427 |||||| || || || || Sbjct 322539 GGTCTTGCCAGTTCCGGG 322556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618400242950320