Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 141 1e-28 seq603 136 5e-27 seq4423 114 2e-20 seq447 111 2e-19 seq4414 109 6e-19 seq3829 95.1 1e-14 seq4413 93.3 5e-14 seq3543 86.0 7e-12 >seq4 Length=1057841 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 125534 CTTCGCCGAGCGCCTCGTTGCTTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 125475 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||| |||||||| || |||||||| ||||| |||||||||||| Sbjct 125474 CTGCGCCATCTTTTGGCTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCTTCTCCAACGA 125415 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 125414 GCTCATCTCCCGCGACGAGGGCCTGCAC 125387 >seq603 Length=994148 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||| ||||| || ||||| Sbjct 841936 CTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCGGGATCCTT 841877 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 841876 CTGCGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 841817 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 841816 GCTCATCTCCCGCGACGAGGGCCTGCAC 841789 >seq4423 Length=186807 Score = 114 bits (126), Expect = 2e-20 Identities = 251/370 (68%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| || || || | ||| | || ||| | ||||||| | | || || || || Sbjct 100488 TCAAAACGTCCAGGCCTAAGTAAAGCTGAATCCAAGATATCAGCCCTGTTGGTGGCAGCA 100429 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| || || || | ||||||||||||||||| |||| | ||||| | | Sbjct 100428 ACAACAATTATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGGTTCAAA 100369 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCA-CTG-----CGTTGCTTTCCC 9700 || || |||| ||||||||| | ||||||| | ||| | |||| |||| Sbjct 100368 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 100315 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAA 9759 || |||||||| ||||||| || || ||||| || ||| | | | | ||| ||| Sbjct 100314 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 100255 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 ||||| || || || ||| || ||||| ||||||||||||||||| | | | | | Sbjct 100254 -AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAGAGCCTG- 100197 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 | |||| || || || ||| || ||| || ||||| || ||| || | |||||||| Sbjct 100196 ATATTGAGAAAAATGGCACACCAGCTTCTCCTGCAATAGCCTTGGCAAGCAAAGTCTTAC 100137 Query 9879 CCGTACCTGG 9888 | || || || Sbjct 100136 CGGTTCCAGG 100127 >seq447 Length=1725674 Score = 111 bits (122), Expect = 2e-19 Identities = 256/381 (67%), Gaps = 16/381 (4%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 || || ||||||||| | ||||| ||||| ||||| | || || | ||| | || Sbjct 1583928 GACCTGACGATCAAACCTCCCTGGGCGAAGAAGCGCTGCGTCCAGCACATCTGGCCTGTT 1583987 Query 9577 CGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || ||||||| |||| | ||| |||| | |||| ||||||||||| ||||| Sbjct 1583988 TGTTGCGGCGAGCACAATGACACCGCTGTTCCCGG--CAAATCCATCCATCTCCGTCAAG 1584045 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTT 9692 || ||||| || || || |||| |||||||| | | | | | || |||| || | Sbjct 1584046 AGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCC--CCCTCCGAGTCCTGCACCACGCT 1584103 Query 9693 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGA 9748 || | || ||||||||||| ||||||||||| || ||||| || ||| || || Sbjct 1584104 GCCTCCCGACGGCATCAATTTCATCAATGAACACAATGCACGGCGCCTTGGCCTTGGCCT 1584163 Query 9749 GCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 9808 | || || ||||||| || | ||||||||||| || |||| ||| || || Sbjct 1584164 TC----TCGAACAGATCCCTGACCCTGGACGCGCCCACACCGACGAACAGCTCGACGAAC 1584219 Query 9809 TTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9868 | | ||||| || || |||||| || | || || || | ||| || || || Sbjct 1584220 TCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCCAGCGACGGCACGCGCCAGC 1584279 Query 9869 AGAGTCTTACCCGTACCTGGC 9889 || ||||| || || || ||| Sbjct 1584280 AGGGTCTTGCCAGTTCCGGGC 1584300 >seq4414 Length=189502 Score = 109 bits (120), Expect = 6e-19 Identities = 250/370 (68%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| || || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 71726 TCAAAACGTCCAGGTCTAAGTAAAGCTGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 71667 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 || |||| || || || | ||||||||||||||||| |||| | ||||| | | Sbjct 71666 ATAACAATTATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGGTTCAAA 71607 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCA-CTG-----CGTTGCTTTCCC 9700 || || |||| ||||||||| | ||||||| | ||| | |||| |||| Sbjct 71606 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 71553 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAA 9759 || |||||||| ||||||| || || ||||| || ||| | | | | ||| ||| Sbjct 71552 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 71493 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 ||||| || || || ||| || ||||| ||||||||||||||||| | | | | | Sbjct 71492 -AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAGAGCCTG- 71435 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 | |||| || || || ||| || || |||||||| || ||| || | ||| |||| Sbjct 71434 ATATTGAGAAAAATGGCACACCAGCCTCTCCCGCAATAGCCTTGGCAAGCAAAGTTTTAC 71375 Query 9879 CCGTACCTGG 9888 | || || || Sbjct 71374 CAGTTCCAGG 71365 >seq3829 Length=445942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 || || ||||||||| | ||||| ||||| ||||| || || | ||| | || Sbjct 322185 GACCTGACGATCAAACCTCCCTGGCCGAAGAAGCGCTGAGTCCAGCACATCTGGCCTGTT 322244 Query 9577 CGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || ||||||| |||| | ||| |||| | |||| || |||||||| ||||| Sbjct 322245 TGTTGCGGCGAGCACAATGACACCACTGTTCCCGG--CAAATCCGTCCATCTCCGTCAAG 322302 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTG 9693 || |||||||| || || |||| |||||||| | | | | | || || | || || Sbjct 322303 AGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCTGCGCCACGCTG 322361 Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | | || ||||||||||| ||||||||||| |||||||| || Sbjct 322362 CCTCCCGACGGCATCAATTTCATCAATGAACACGATGCACGG 322403 >seq4413 Length=1061291 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/229 (71%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCT--TCAACGG 104197 |||||||||| |||||||| | || |||||||||| || || |||| | || | Sbjct 3624 GACTACGACT------ATTTTGGTTTTAAGACCCTTGAGA-GATCTTATCTGTTGAAAG- 3675 Query 104198 CTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATT 104257 | | ||| | |||||| |||||| | ||| | ||| | || |||| || ||| Sbjct 3676 -TTGGTGGAAAGGTTGTGGAAAGACCACAGCATATGCTAATGAGAGTTTCCATTGGGATT 3734 Query 104258 CATGGGGAAGACATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATGTT 104316 || ||| || ||||| |||| || ||| ||||| ||| |||||| || | ||| Sbjct 3735 CACAAGGATGATATTGAGTCTG-CTATCAGAACATACCACATGATGTCTCAGCGCTGGTT 3793 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 | ||| ||| |||||||||| ||||||||||| || ||||| || ||| Sbjct 3794 TACTCATGCATCACCAACCCTTTTCAATGCTGGCACTCCAAGGCCTCAA 3842 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 105136 AACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGC 105195 || |||||| || || |||| | | ||||||| |||| |||||| ||||||||||| Sbjct 5231 AATTGTCACATGGAATCTCAACAAAATAATTGATACTAATTATTACCCTGTTGAGACTGC 5290 Query 105196 TCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGT 105255 | | ||| |||||||| || | ||||| || ||||||||||||| || || ||| Sbjct 5291 AAGGAGATCAAATATGAGGCAGAGGCCAATCGGAATCGGTGTTCAGGGCCTGGCAGATAC 5350 Query 105256 ATTCATT 105262 |||||| Sbjct 5351 TTTCATT 5357 >seq3543 Length=1405827 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 15881 ACTTCCAGTTCCTATCGCAATTGAGACAACTCACAAAAGTTGTCATTGGTTCATCCGCAG 15940 ||||||||| | | |||||| | |||| ||||||||||||||||||| ||||| ||| Sbjct 443103 ACTTCCAGTGGTTGTTGCAATTCACACAAGTCACAAAAGTTGTCATTGGCTCATCAGCAC 443162 Query 15941 ACCGAGTTTGAAGTTGATAATAGGTTGTTTTC 15972 |||||| || || ||||| || ||||| ||| Sbjct 443163 TCCGAGTCTGCAGCTGATAGTAAGTTGTCTTC 443194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583227831183280