Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 196 5e-45 seq603 168 7e-37 >seq4 Length=1057841 Score = 196 bits (216), Expect = 5e-45 Identities = 388/566 (69%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || ||||||||| | | |||| | || ||||| || | | || |||||| Sbjct 125947 TTCCCCATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGTCGGTGGCGTCGTTCTGG 125888 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTAC 59678 | | |||||| | |||||| || ||| | | ||||||| ||| | Sbjct 125887 ACGGCGGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCGTGCTGTCCCCC 125828 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| ||| |||||| || || ||||||||||| || |||||| || ||| Sbjct 125827 GACGAGCGGCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCTGATGGCATCGTG 125768 Query 59739 ATGGAAAATATAGA---CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | || | | | ||| || || ||| | |||||||| || | Sbjct 125767 CTCGAGAACCTCGCGTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCGCGCGCC 125711 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| || ||| ||| || |||| ||||||||| |||| ||||||||| || | Sbjct 125710 TTCTACGGGTTCCAGATCGC-CATCGAGAATATCCACTCGGAGATGTACTCGCTGCTGCT 125652 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | || || || | ||||||| |||| ||||| ||||| || || Sbjct 125651 CGAGACGTACATCCGCGACGACGTCGAGAAGGACCGTCTCTTCCGCGCCATCGACACCGT 125592 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCA 59972 ||| || || | || || || |||||||||| ||||| || | | |||| Sbjct 125591 CCCTGCTGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC-- 125534 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | ||||| || ||||| || || ||||||||||| ||||| ||| Sbjct 125533 TTCGCCGAGCGCCTCGTTGCTTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 125474 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || || ||||| || ||||| |||||||||||||| || | |||||||||||| Sbjct 125473 TGCGCCATCTTTTGGCTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCTTCTCCAACGAG 125414 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || ||||| ||||||||||| || Sbjct 125413 CTCATCTCCCGCGACGAGGGCCTGCA 125388 >seq603 Length=994148 Score = 168 bits (186), Expect = 7e-37 Identities = 382/566 (67%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || |||||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 842349 TTCCCCATCCGGTACCCTCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGG 842290 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTAC 59678 | |||||| | |||||| || ||| | | ||||||| ||| | Sbjct 842289 ACGACGGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACGCTGTCCCCC 842230 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| |||||| || || || ||||||||||| || |||||| || ||| Sbjct 842229 GACGAGCGCCATTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCTCTGATGGTATCGTG 842170 Query 59739 ATGGAAAATATAGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | || || ||| || || ||| | |||||||| || | Sbjct 842169 CTCGAGAACCTCGCGTCGAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCGCGCGCC 842113 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||| || |||| ||||||||| || | Sbjct 842112 TTCTACGGTTTCCAGATCGC-CATCGAGAACATCCATTCGGAGATGTACTCGCTGCTGCT 842054 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | || || || | ||||||| | || ||||| |||||||| || Sbjct 842053 CGAGACGTACATCCGCGACGACGTCGAGAAGGACCGCCTTTTCCGCGCCATAGACACCGT 841994 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCA 59972 ||||| || | || || || |||||||||| ||||| || | | |||| Sbjct 841993 TCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGTGAGCGC-- 841936 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || || | || || || ||||| || || ||||| ||||| || || ||| Sbjct 841935 TTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCGGGATCCTTC 841876 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||||||||||||||||||||| | |||||||||||| Sbjct 841875 TGCGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 841816 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || ||||| ||||||||||| || Sbjct 841815 CTCATCTCCCGCGACGAGGGCCTGCA 841790 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/154 (73%), Gaps = 10/154 (6%) Strand=Plus/Minus Query 60270 ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTC---ATGGCCCA--GTTTGGAGAAG 60324 |||| |||||||| |||| ||||| ||||||||| ||||| | | | ||||| Sbjct 841638 ATGAGCCAGTACATCGAGTTCGTCGCTGACCGCCTCCTAATGGCGCTCGGCTGCAAGAAG 841579 Query 60325 GACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGA 60384 || ||| ||| | ||||| ||||||||||||||| |||||| || | || | Sbjct 841578 -----ATGTACAACGTCACCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCA 841524 Query 60385 AGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||| ||||| |||||||| ||||| || || Sbjct 841523 AGACCAATTTCTTCGAGAAGCGCGTCGGCGACTA 841490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548493794635680