Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 141 1e-28 seq603 127 2e-24 seq4173 93.3 5e-14 seq4160 91.5 2e-13 seq1532 91.5 2e-13 seq3967 89.7 6e-13 seq1547 89.7 6e-13 seq1467 89.7 6e-13 seq503 89.7 6e-13 seq1459 84.2 2e-11 >seq4 Length=1057841 Score = 141 bits (156), Expect = 1e-28 Identities = 290/420 (69%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || || | ||| || ||||| || || |||||||| | |||||||||||| ||| Sbjct 125415 TCGTTGGAGAAGGTAAGACCCGGCATGAGGCCGCGCTTCTTAAGCCAAAAGATGGCGCAG 125474 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| || |||||||||||| ||||| || || || || || ||||| | ||||| Sbjct 125475 AAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAAGCAACGAGGCGCTCGGCGAA- 125533 Query 74910 GGTGCATCG--GAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG 74966 | || ||| | ||| ||||| | ||||| || || || || || |||||| Sbjct 125534 -GCGC-TCGCCGCCGTCGATCCAGCGCATGGCCCACTCGGCCTTGCGGCGCACAGCAGGG 125591 Query 74967 ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCA 75026 || || ||||| || ||||||| | ||||||| || || || | | | || Sbjct 125592 ACGGTGTCGATGGCGCGGAAGAGACGGTCCTTCTCGACGTCGTCGCGGATGTACGTCTCG 125651 Query 75027 ATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAA 75085 | || || |||||| ||||||| || || |||| || ||| |||| || ||||||| Sbjct 125652 AGCAGCAGCGAGTACATCTCCGAGTGGATATTCTCGATG-GCGATCTGGAACCCGTAGAA 125710 Query 75086 AGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATG 75143 | |||||||| || | ||| || || || || | | | ||| ||||| | Sbjct 125711 GGCGCGCGCCTCGGCGACCTGCACGTCGGACATG-AACCTGGACG-CGAGGTTCTCGAGC 125768 Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 |||||||| || ||||||||||| || || || || ||| ||||| ||||| ||| Sbjct 125769 ACGATGCCATCAGAGGCGGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGCCGCTCGTCG 125828 >seq603 Length=994148 Score = 127 bits (140), Expect = 2e-24 Identities = 257/376 (68%), Gaps = 4/376 (1%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || ||||||||||| | ||| |||||||| |||||||| || ||| Sbjct 841832 AGGCCCGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCCGAGAAA 841891 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 |||||||| ||||| || || |||||||| ||||| | ||||| | || | | ||| Sbjct 841892 AAGATGCCCTCGACGCAGGCGAAGGCGACTAGGCGCTCGGCGAAGCGCTCA-CCGCCGTC 841950 Query 74925 -ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTG 74983 ||||| | ||||| || || || || || || || || || || || || | Sbjct 841951 GATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGAACGGTGTCTATGGCGCG 842010 Query 74984 GAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 ||| |||| ||||||| || || || | | | || | || || |||||| | Sbjct 842011 GAAAAGGCGGTCCTTCTCGACGTCGTCGCGGATGTACGTCTCGAGCAGCAGCGAGTACAT 842070 Query 75044 CTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAA 75102 ||||||||| || |||| || ||| |||| | ||||||| | |||||||| || | Sbjct 842071 CTCCGAATGGATGTTCTCGATG-GCGATCTGGAAACCGTAGAAGGCGCGCGCCTCGGCGA 842129 Query 75103 TCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGG 75162 ||| || || || || ||| ||||| | ||||| || || ||||||| Sbjct 842130 CCTGCACGTCGGACATGAACCTCGACGCGAGGTTCTCGAGCACGATACCATCAGAGGCGG 842189 Query 75163 CGAAAAAAGCCAGTAC 75178 |||| || || || || Sbjct 842190 CGAAGAAGGCGAGCAC 842205 >seq4173 Length=299410 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 97766 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 97825 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 97826 TGAGCTACGAAAGCAA 97841 >seq4160 Length=299818 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 158468 CTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 158527 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 158528 CTGAGCTACGAAAGC 158542 >seq1532 Length=14642 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1643 CTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 1702 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1703 CTGAGCTACGAAAGC 1717 >seq3967 Length=402909 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 158038 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 158097 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 158098 TGAGCTACGAAAGC 158111 >seq1547 Length=694355 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 298848 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 298789 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 298788 TGAGCTACGAAAGC 298775 >seq1467 Length=15543 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 11482 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 11423 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 11422 TGAGCTACGAAAGC 11409 >seq503 Length=925055 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 878561 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 878620 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 878621 TGAGCTACGAAAGC 878634 >seq1459 Length=692598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 675177 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 675118 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 675117 ACTGAGCTACGAGAGC 675102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547185068615600