Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1848 138 1e-27 seq4493 122 8e-23 seq4294 105 6e-18 seq2624 105 6e-18 seq4197 104 2e-17 seq2778 104 2e-17 seq192 100 2e-16 seq1042 84.2 2e-11 >seq1848 Length=11040 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||||||| | || |||||||| || || | || Sbjct 5861 CATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACTCTTGAGGTAGAGTCTTC 5920 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 5921 CGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 5980 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||||| || | |||||||| || |||| || | |||| | |||| ||||| Sbjct 5981 GCAACGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCCGACTACAA 6040 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||||| || | || | ||| | |||| ||||| Sbjct 6041 CATCCAGAAGGAGTCGACCTTGCACCTTGTCCTCCGTCTTAGGGGAGGCAT 6091 Score = 125 bits (138), Expect = 6e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||||||| |||| |||||||| ||||| | || Sbjct 5633 CATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACTATCACTCTTGAGGTGGAGTCTTC 5692 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | ||||| || || || ||||| || || || || || || || Sbjct 5693 CGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 5752 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | |||||||| || |||| ||| | ||| | |||| ||||| Sbjct 5753 GCAACGCTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTACAA 5812 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||||||| ||| Sbjct 5813 CATCCAGAAGGAGTCTACC 5831 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| |||| || || || ||||| | || Sbjct 5406 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCCTCT 5465 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || || || || || || || || || || || || Sbjct 5466 GACACCATCGACAACGTCAAAGCTAAGATCCAGGATAAGGAGGGTATTCCCCCTGACCAG 5525 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| |||||||| |||| || | ||| | |||| |||||| Sbjct 5526 CAGCGTCTCATCTTCGCTGGCAAACAGCTGGAGGATGGCCGCACCCTCGCCGACTACAAC 5585 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||| ||| Sbjct 5586 ATCCAGAAGGAGTCCACC 5603 >seq4493 Length=164055 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| |||| || ||||| ||||| | || Sbjct 95520 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCCTCT 95579 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || ||||| || || ||||| Sbjct 95580 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 95639 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || |||| ||| | |||| || | || |||||| Sbjct 95640 CAGCGTCTTATCTTTGCTGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCTGACTACAAC 95699 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || | || | ||| | |||| ||||| Sbjct 95700 ATCCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGTCTCAGGGGAGGCAT 95749 >seq4294 Length=230714 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 44980 ATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACGCTGGAGGTGGAGTCCTCG 45039 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 45040 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 45099 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || ||||||| | || | |||| |||||| Sbjct 45100 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACGCTCGCCGACTACAAC 45159 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||||||| | || ||||| | || |||| || ||| Sbjct 45160 ATCCAGAAGGAGTCGACCCTGCACCTGGTTCTCCGCCTGCGCGGCGGC 45207 >seq2624 Length=565299 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||||||||| | ||||| ||||| || ||| | || Sbjct 25766 CATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACAATTACGCTTGAGGTCGAATCCTC 25707 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || || || || ||||| || || || || || || || Sbjct 25706 AGACACGATCGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCA 25647 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||| || |||| || | ||| | | |||||||| Sbjct 25646 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGATTACAA 25587 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| |||||||| || Sbjct 25586 CATTCAGAAGGAGTCTAC 25569 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | || || ||||| || || | || Sbjct 25537 ATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCA 25478 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || ||||| || || || || Sbjct 25477 GACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 25418 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || ||| | ||| | | || |||||| Sbjct 25417 CAGCGTCTCATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCTGACTACAAC 25358 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||| || | | ||||||| || Sbjct 25357 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGAGGCTCAGGGGTGGTAT 25308 >seq4197 Length=262831 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||||||||||||| | || || ||||| || || | || Sbjct 76367 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCA 76426 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| || || || || Sbjct 76427 GACACAATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 76486 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || | || || | ||| || | || |||||| Sbjct 76487 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCTGACTACAAC 76546 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || |||||||| ||| | || ||||| Sbjct 76547 ATCCAGAAGGAGTCCACCCTTCACCTGGTT 76576 >seq2778 Length=1391004 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || |||||| | |||| ||| || || || ||| Sbjct 174000 ATGCAGATCTTTGTCAAGACTCTCACAGGCAAGACCATTATTCTGGAGGTTGAGAGCTCC 173941 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| ||||| ||||| || || || || || Sbjct 173940 GACACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAG 173881 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| || |||| || | ||| || |||| |||||| Sbjct 173880 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTGCCGACTACAAC 173821 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| ||| | || |||| | || | ||||||| Sbjct 173820 ATTCAGAAAGAGTCTACCCTCCACCTGGTGCTCCGCCTCAGGGGTGG 173774 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || ||||| ||||||| || || || || || Sbjct 174228 ATGCAGATTTTTGTCAAGACTCTCACTGGCAAAACTATTACCCTGGAGGTTGAGAGCTCT 174169 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || | || || Sbjct 174168 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCTAGACCAG 174109 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || || |||| || | || |||||| Sbjct 174108 CAGCGTCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGTAGGACCCTTGCTGACTACAAC 174049 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| | || | ||||||| || Sbjct 174048 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGTAT 173999 >seq192 Length=981986 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 848797 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCG 848856 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 848857 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 848916 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTACAA 27166 |||||| | || | ||||||||| || |||| || | ||| || | |||| || || Sbjct 848917 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGA-CGAACGCTCGCCGACTATAA 848975 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || |||||||||||| | || |||| | || |||| |||||| Sbjct 848976 CATCCAGAAGGAGTCGACCCTGCACCTGGTGCTCCGCCTGCGCGGTGGC 849024 >seq1042 Length=22717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 27078 CAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTG 27137 || ||||| ||||| || || || |||||||||||||| |||| || |||||||| ||| Sbjct 10463 CAGGACAAGGAAGGGATTCCTCCAGATCAACAGCGTTTGATATTTGCTGGCAAACAGTTG 10522 Query 27138 GAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || | || | | || ||||||||||| ||||||||||| | || ||||| Sbjct 10523 GAGGATGGACGCACATTGGCTGACTACAACATTCAGAAGGAGTCGACTCTTCACTTGGT 10581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434893816237440