Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq4204 497 1e-135 seq3130 340 2e-88 seq3676 282 5e-71 seq203 161 1e-34 seq4136 141 1e-28 seq4428 113 5e-20 seq4131 86.0 8e-12 >seq4204 Length=279751 Score = 497 bits (550), Expect = 1e-135 Identities = 684/954 (72%), Gaps = 17/954 (2%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| | || ||||| ||||| | ||||| || | | ||||| | | ||| Sbjct 216714 TTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTC-TGTA 216656 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || |||| || | || ||||| || |||||||| || || || Sbjct 216655 TTTATTATCGCCTTCATCACAGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTT 216596 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | | ||| |||| ||||||||||| || ||||| || || | | || | || Sbjct 216595 TCTAGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCG 216536 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | ||||| |||||||| |||||||| ||| | ||||| || ||| | ||| Sbjct 216535 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 216476 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 216475 AATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 216416 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | |||||||| |||| | | || || |||||||||||||| ||||||||| Sbjct 216415 GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 216356 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 | || || |||| | ||||| | | ||||| | ||||||||| | Sbjct 216355 TTAGC-----TA-CTGCTG---------TTTTCTTGATTTATCCTATTGGTCAAGGAAGT 216311 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || ||||| |||||||||||| |||||||||| Sbjct 216310 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 216251 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 |||||||||||||| || ||||| ||||| || ||| | || ||||| ||||| || || Sbjct 216250 GCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 216191 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 216190 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 216131 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| ||| || ||||| |||||||| || || Sbjct 216130 ACTGAAAATGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAAT 216071 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 ||||| || || || ||||||||||| || | |||||||| |||||| ||| || ||| Sbjct 216070 ATTGTGGCCGCTCATGGTTACTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAAC 216011 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | ||||||||| | || || | || || || | || ||||| ||||| Sbjct 216010 TCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCT 215951 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || | || ||||| |||||||| ||||| ||||| |||||||| ||||| | Sbjct 215950 TTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATCTGTACTT 215891 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | | ||| || ||| ||| |||| |||||| | |||||||| || |||||| Sbjct 215890 GATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGT 215831 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 215830 ATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 340 bits (376), Expect = 2e-88 Identities = 485/679 (71%), Gaps = 4/679 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| | || ||||| ||||| | ||||| || | | ||||| | | ||| Sbjct 1329 TTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTC-TGTA 1271 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || |||||||| || || || Sbjct 1270 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 1211 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| ||||||||||| || ||||| || || | | || | || Sbjct 1210 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCG 1151 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | ||||| |||||||| |||||||| ||| | ||||| || ||| | ||| Sbjct 1150 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 1091 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 1090 AATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 1031 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | |||||||| |||| | | || || |||||||||||||| ||||||||| Sbjct 1030 GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 971 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | | ||||| | ||||||||| | Sbjct 970 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGT 911 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || ||||| |||||||||||| |||||||||| Sbjct 910 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 851 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 |||||||||||||| || ||||| ||||| || ||| | || ||||| ||||| || ||| Sbjct 850 GCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGT 791 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || || || || | || || ||| | | || || || Sbjct 790 GGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 731 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| ||| || ||||| |||||||| | || Sbjct 730 ACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAAGAGACTT--AAT 673 Query 176806 ATTGTAGCTGCACACGGTT 176824 ||||| || || || |||| Sbjct 672 ATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 282 bits (312), Expect = 5e-71 Identities = 366/506 (72%), Gaps = 5/506 (1%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || |||||||| || || || Sbjct 288282 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 288341 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||| |||| ||||||||||| || ||||| || || | | || | || Sbjct 288342 TTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCG 288401 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | ||||| |||||||| |||||||| ||| | ||||| || ||| | ||| Sbjct 288402 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 288461 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 288462 AATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 288521 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | |||||||| |||| | | || || |||||||||||||| ||||||||| Sbjct 288522 GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 288581 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | | || | || |||||| | | ||||| | ||||||||| | Sbjct 288582 TCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGT 288641 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || ||||| |||||||||||| |||||||||| Sbjct 288642 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 288701 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 | |||||||||||| || ||||| ||||| | ||| | || ||||| ||||||| Sbjct 288702 GTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC-----TGTTTGGC 288756 Query 176686 GGATCTCTTTTCTCAGCAATGCACGG 176711 || || || ||| || ||||| || Sbjct 288757 GGTTCCCTATTCAGTGCTATGCATGG 288782 >seq203 Length=971741 Score = 161 bits (178), Expect = 1e-34 Identities = 149/189 (79%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 || ||||| ||||| | ||| || | || ||||| |||||||| ||||| ||||| ||| Sbjct 777832 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 777891 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAAC 177030 ||||| ||||| | || | | ||| || ||| ||| |||| |||||| | ||| Sbjct 777892 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 777951 Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 ||||| || |||||||||||||| |||||||| |||||||||||||||||||| || ||| Sbjct 777952 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 778011 Query 177091 CTTGCTGCT 177099 || |||||| Sbjct 778012 CTAGCTGCT 778020 >seq4136 Length=310402 Score = 141 bits (156), Expect = 1e-28 Identities = 183/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 176778 ATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCT 176837 ||| || ||||| |||||||| || || ||||| || || || ||||||||||| || | Sbjct 3274 ATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATT 3215 Query 176838 TATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATT 176897 |||||||| |||||| ||| || ||||| | | | ||||||||| | || || | Sbjct 3214 AATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTG 3155 Query 176898 CCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAA 176957 || || || | || ||||| ||||| | ||| || | || ||||| |||||||| || Sbjct 3154 GCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAA 3095 Query 176958 CGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGG 177017 ||| ||||| |||||||| ||||| | || | | ||| || ||| ||| |||| Sbjct 3094 CGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGC 3035 Query 177018 AGATATCCTTAAC 177030 |||||| | ||| Sbjct 3034 TGATATCATCAAC 3022 >seq4428 Length=185154 Score = 113 bits (124), Expect = 5e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 176571 TGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGA 176630 ||||||||||||| | | || || ||||| |||||||||||| |||||||||| ||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 176631 GCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATC 176690 | ||||||| || ||||| |||| || ||| | || ||||| ||||| || || || || Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 176691 TCTTTTC 176697 || ||| Sbjct 19579 CCTATTC 19573 >seq4131 Length=315116 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || ||| | ||||| |||| ||| |||||||| ||| ||||| || ||| | ||| Sbjct 226348 GCGATTGGATTGCACTTTTACCTAATTTGGGAAGCTGCATATGTTGATGAGTGGTTATAC 226407 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||| | || || || | || |||| | |||||| ||| || || || ||| Sbjct 226408 AATAGCGGCCCTTATGAGCTAATTGTTCTACACTTC-TTAC---TAGCTTG--TTGTATG 226461 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATA 176504 || || | |||||||| |||| ||| || || |||||||||||||| ||||||||| Sbjct 226462 GGTCGTGAGTGGGAACTGAGTTTCAGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATA 226520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603460287479040