Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4282 84.2 2e-11 >seq4282 Length=242231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 6609 ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCA 6668 ||| ||| || ||||| |||||||| || || |||| || ||||||||||| || | Sbjct 169661 ACCGCAC-ACTTGAGCAATCATGTATGTCAGAAGAGAATATGATGCAATGTTGAATGGAA 169719 Query 6669 CCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGA 6728 | || | ||||| ||| | || |||||||| | |||||| || |||||||| ||| | | Sbjct 169720 CACCAAGTCCCATATCTGCAGAGCGTTGATACATCTGGCATGATAGCTCCCCGTTCTCAA 169779 Query 6729 CGTAGAATTGGCAGAG 6744 | || || | | |||| Sbjct 169780 CATAAAACTAGAAGAG 169795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 34601 CTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGA 34660 |||| | | || || || | ||| |||||||| || |||||| | |||||||| || | | Sbjct 169795 CTCTTCTAGTTTTATGTTGAGAACGGGGAGCTATCATGCCAGATGTATCAACGCTCTGCA 169736 Query 34661 GACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATC 34720 || ||||| | || || || ||||||||||| || |||| || || |||||||| Sbjct 169735 GATATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATT 169676 Query 34721 GCTCATGTCGTGGGGT 34736 ||||| || ||| ||| Sbjct 169675 GCTCAAGT-GTGCGGT 169661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448237061967840