Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4197 102 6e-17 seq4493 95.1 8e-15 seq1848 95.1 8e-15 seq2778 93.3 3e-14 seq1042 93.3 3e-14 seq348 86.0 4e-12 seq1692 84.2 1e-11 >seq4197 Length=262831 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || ||||| || || || || ||| || Sbjct 76139 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACACTTGAGGTCGAGTCCTCG 76198 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || ||| | || ||||| || Sbjct 76199 GACACGATCGACAATGTGAAGGC-TAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCA 76257 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || ||||| || || || || | ||||| | | ||| ||||| Sbjct 76258 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCCGACTACAA 76317 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 76318 CATCCAGAAGGAGTCCAC 76335 >seq4493 Length=164055 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| ||||| || || || | Sbjct 95748 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 95807 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || ||| | || || || || Sbjct 95808 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 95867 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || |||||||| | ||||| | | || |||||| Sbjct 95868 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTGCTGACTACAAC 95927 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 95928 ATCCAGAAGGAGTCAAC 95944 >seq1848 Length=11040 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || |||||||| || || || || | Sbjct 5634 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACTATCACTCTTGAGGTGGAGTCTTCC 5693 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || ||| | || || || || Sbjct 5694 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 5753 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||||||||| || ||||| |||| ||||| | | ||| |||||| Sbjct 5754 CAACGCTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTACAAC 5813 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 5814 ATCCAGAAGGAGTCTAC 5830 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || || || ||||| ||||| || || ||| | Sbjct 5406 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCCTCT 5465 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || || || || ||| | || || || || Sbjct 5466 GACACCATCGACAACGTCAAAGCTAAGATCCAGGATAAGGAGGGTATTCCCCCTGACCAG 5525 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || |||||||| ||||| || | ||||| | | ||| |||||| Sbjct 5526 CAGCGTCTCATCTTCGCTGGCAAACAGCTGGAGGATGGCCGCACCCTCGCCGACTACAAC 5585 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 5586 ATCCAGAAGGAGTCCAC 5602 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || |||||||| || || || || | Sbjct 5862 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACTCTTGAGGTAGAGTCTTCC 5921 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || || || || Sbjct 5922 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 5981 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||||||||| || ||||| || | | || | | ||| |||||| Sbjct 5982 CAACGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCCGACTACAAC 6041 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || || || ||||| || || || Sbjct 6042 ATCCAGAAGGAGTCGACCTTGCA 6064 >seq2778 Length=1391004 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || || | ||| || ||||| | | Sbjct 174000 ATGCAGATCTTTGTCAAGACTCTCACAGGCAAGACCATTATTCTGGAGGTTGAGAGCTCC 173941 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| |||||| | || ||||| || Sbjct 173940 GACACCATCGACAATGTGAAGGCCAAGA-TTCAGGACAAGGAAGGTATCCCCCCAGACCA 173882 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || ||||| || | || || | | ||| ||||| Sbjct 173881 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTGCCGACTACAA 173822 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 173821 CATTCAGAAAGAGTCTAC 173804 >seq1042 Length=22717 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || ||||||||||||||||| |||||||| |||||||| |||| Sbjct 10466 GACAAGGAAGGGATTCCTCCAGATCAACAGCGTTTGATATTTGCTGGCAAACAGTTGGAG 10525 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | |||||| || | || |||||||| || || ||||| || Sbjct 10526 GATGGACGCACATTGGCTGACTACAACATTCAGAAGGAGTCGAC 10569 >seq348 Length=941607 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| ||| | || |||||||| || | | || ||||| || || ||| ||||| Sbjct 469939 GACAAAGAGGGTATTCCCCCAGATCAGCAAAGGCTGATTTTTGCAGGGAAGCAATTGGAA 469998 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | ||| |||| ||||||||||| || ||||||||||| | ||||| || | Sbjct 469999 GATGGGCACACATTAGCTGATTACAACATTCAGAAAGAGTCCACTCTCCATTTGGTCCTG 470058 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | |||| ||| Sbjct 470059 AGGCTCAGAGGTGGA 470073 >seq1692 Length=674084 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| || | || |||||||| || | | || ||||| || || ||| ||||| Sbjct 587269 GACAAAGAGGGCATTCCCCCAGATCAGCAAAGGCTGATTTTTGCAGGGAAGCAATTGGAA 587210 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || | ||||| |||| ||||||||||| || |||||||| ||| | ||||| || Sbjct 587209 GATGGGCGCACATTAGCTGATTACAACATTCAGAAAGAGTCAACACTCCATTTGGT 587154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337990971657176