Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2113 107 3e-18 seq4413 91.5 2e-13 >seq2113 Length=1451509 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||||| ||| || | ||| |||| | || ||| |||| ||| || Sbjct 1176538 CCACCTTGATCAACATATCGGGCAGTATCATTGAAAACACGCAGCATAGGAACAATTCCA 1176597 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || |||||||||||||| |||||| || ||| |||| || ||||| || ||| Sbjct 1176598 TTGGAGGTTCCATTTGTTCCTCGAATATAGCTCCCAGTTGCACGGATATTGTGAACTGAT 1176657 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || ||| | ||| || |||| ||||| || || Sbjct 1176658 ACACCAATCCCTCCAGCAGATTTGCTTATAACAGCACATTCCTTCAGAGTATCATATATT 1176717 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || |||||||| ||||| | ||| ||||||||| Sbjct 1176718 CCCTCGATGCTGTCATCTTTCATGCAGATAAGGAAACAGCTA 1176759 >seq4413 Length=1061291 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || || |||||||| |||||||| | ||| | | | Sbjct 3830 AGTGCCAGCATTGAAAAGGGTTGGTGATGCATGAGTAAACCAGCGCTGAGACATCATGTG 3771 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 ||||||| ||||| || || || || | ||| ||||| || | | || | ||| | Sbjct 3770 GTATGTTCTGATAGCAGACTCAATATCATCCTTG-TGAATCCCAATGGAAACTCTCATTA 3712 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||||||||| |||||||| || ||| | | |||||||| || ||| | || | Sbjct 3711 GCATATGCTGTGGTCTTTCCACAACCTTTCCACCAACTTTCAACAGATAAGATCTCTCAA 3652 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 || |||||||||||||||| ||| ||| ||||| || ||||| || Sbjct 3651 GGGTCTTAAAACCAAAATAGTCGTAGTCAAAATCTCTATCATAAATTAT 3603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694629533846080