Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2113 107 3e-18 seq4413 86.0 9e-12 >seq2113 Length=1451509 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||||| |||||| | ||| |||| | || ||| |||| ||| || Sbjct 1176538 CCACCTTGATCAACATATCGGGCAGTATCATTGAAAACACGCAGCATAGGAACAATTCCA 1176597 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || ||||||||||| |||||| || ||| |||||| ||||| || ||| Sbjct 1176598 TTGGAGGTTCCATTTGTTCCTCGAATATAGCTCCCAGTTGCACGGATATTGTGAACTGAT 1176657 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| || | |||||| |||| || ||||| || Sbjct 1176658 ACACCAATCCCTCCAGCAGATTTGCTTATAACAGCACATTCCTTCAGAGTATCATATATT 1176717 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || || ||||| ||||| | ||| ||||||||| Sbjct 1176718 CCCTCGATGCTGTCATCTTTCATGCAGATAAGGAAACAGCTA 1176759 >seq4413 Length=1061291 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || ||||| || | || || ||||||||||| ||||| | ||| | | | Sbjct 3830 AGTGCCAGCATTGAAAAGGGTTGGTGATGCATGAGTAAACCAGCGCTGAGACATCATGTG 3771 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 ||||||| ||| | | || ||||| | ||| ||||| || | | || | ||| | Sbjct 3770 GTATGTTCTGATAGCAGACTCAATATCATCCTTG-TGAATCCCAATGGAAACTCTCATTA 3712 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||||||||| |||| ||| ||| ||| | | |||||||| || ||| | || | Sbjct 3711 GCATATGCTGTGGTCTTTCCACAACCTTTCCACCAACTTTCAACAGATAAGATCTCTCAA 3652 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || |||||||||||||||| ||| ||| ||||| || ||||| || Sbjct 3651 GGGTCTTAAAACCAAAATAGTCGTAGTCAAAATCTCTATCATAAATTAT 3603 Score = 86.0 bits (94), Expect = 9e-12 Identities = 156/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | || |||| | || ||| |||| ||| ||| Sbjct 4140 CCACCTTGATCAACATAACGTGCAGTATCGTTGAAAACACGCAGCATGGGAACAATTCCG 4081 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||| ||||| ||||| ||||||||| ||| || | |||||| ||| || Sbjct 4080 TTAGATGCTCCATTCGTTCCCCGAATATAACTCCCAGTAGCTCTAATATTGTGAATTGAG 4021 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTAGAGCACAGCGTTTCAAT---GTGTCATA 76929 | || |||||||| || ||||| | ||| ||| | || || || ||||| Sbjct 4020 ACACCAATTCCTCCAGCACATTT----GCTTATGGCAGCACATTCTGATAGAGTATCATA 3965 Query 76930 GATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || ||||| ||||||||||| ||||| | || || |||||| Sbjct 3964 AATTCCCTCGATACTATCATCTTTCATGCAGATGAGGAAGCAGCTA 3919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712894101383040