Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq4204 616 2e-171 seq3130 432 4e-116 seq3676 349 4e-91 seq4136 176 5e-39 seq203 165 9e-36 seq2035 102 9e-17 seq238 96.9 4e-15 seq4131 82.4 9e-11 >seq4204 Length=279751 Score = 616 bits (682), Expect = 2e-171 Identities = 731/989 (74%), Gaps = 19/989 (2%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| |||||| ||||| ||||| || ||| | || |||| |||||||| || || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | | || ||| | ||| || || |||||||||||| || | Sbjct 216688 ATGAT-CCCTACCTTATTGACTGCAACTTC-TGTATTTATTATCGCCTTCATCACAGCCC 216631 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 ||| || || || ||||| || || || || || || |||| | | |||||||||| Sbjct 216630 CTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACA 216571 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || ||||||||||| |||| ||| ||||| || ||||| ||||||| ||||| | Sbjct 216570 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 216511 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| ||| | | || || ||| | ||||| || || |||| | || ||| Sbjct 216510 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 216451 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||| |||||||||||||||||||| || || Sbjct 216450 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 216391 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||||||||||||| || ||||| | ||| ||| Sbjct 216390 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTACTG--------------- 216346 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || | |||||| | |||||||| ||||||||||| |||||| | || | Sbjct 216345 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 | ||||| || ||||||| ||| | || |||||||| |||||||||||||| ||||| | Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | || || ||| | || ||||| ||||| || |||||||| || |||||||| ||||| | Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585 |||| |||| || ||| || | | || ||||| |||||||| || || | | Sbjct 216165 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645 |||||| |||||||| || ||||| || || || || || |||||||| |||||||||| Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 | || | || |||||||| ||| || |||||||| ||||| | ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765 | || |||||||| || || || ||||| |||||| | || |||| || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825 |||| ||||| ||||| |||||||| || | | ||| | || ||||| || | || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885 | ||||| || | ||||||||||| ||| || |||||||| |||||||| ||||||| Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCT 164914 |||||||||||||||| ||||| |||||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 432 bits (478), Expect = 4e-116 Identities = 525/709 (74%), Gaps = 6/709 (1%) Strand=Plus/Minus Query 163933 TAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGAT 163992 |||| || ||||| ||||| || ||| | || |||| |||||||| || ||||||| Sbjct 1358 TAACCGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT 1299 Query 163993 TCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCCTCCT 164050 |||| ||| | | | || ||| | ||| || || ||||||||||||| || ||||| Sbjct 1298 -CCCTACCTTATTGACTGCAACTTC-TGTATTTATTATCGCCTTCATCGCAGCCCCTCCA 1241 Query 164051 GTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATC 164110 || || || ||||| || || || || || ||||||| | | ||||||||||| || Sbjct 1240 GTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATT 1181 Query 164111 ATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGG 164170 ||||||||||| |||| ||| ||||| || ||||| ||||||| ||||| || ||| Sbjct 1180 ATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGG 1121 Query 164171 GAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTC 164230 ||||| ||| | | || || ||| | ||||| || || |||| | || |||| | Sbjct 1120 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTA 1061 Query 164231 CACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTT 164290 |||||| | |||| | | ||| |||||||||||||||||||| || |||||| Sbjct 1060 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 1001 Query 164291 GGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTG 164350 |||||||||||||||||| || ||||| || |||||||| || || || | ||| || Sbjct 1000 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 941 Query 164351 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCT 164410 ||| || | |||||| | |||||||| ||||||||||| |||||| | || || ||| Sbjct 940 TTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 881 Query 164411 GGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTC 164470 || || ||||||| ||| | || |||||||| |||||||||||||| ||||| || || Sbjct 880 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTT 821 Query 164471 CATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCG 164530 || ||| | || ||||| ||||| || || ||||| || |||||||| || || ||||| Sbjct 820 CACATGTTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCC 761 Query 164531 CTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTAC 164590 |||| || ||| || | | || ||||| |||||||| || || |||||||| Sbjct 760 TTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTAC 701 Query 164591 AAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTT 164639 | |||||||| || ||||| || | || || || |||||||| |||| Sbjct 700 AGATTTGGTCAAGAGGAAGAGACTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 349 bits (386), Expect = 4e-91 Identities = 443/604 (73%), Gaps = 9/604 (1%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| |||||| ||| | ||||| || ||| | || |||| |||| || || || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | || ||| | ||| || || ||||||||||||| || | Sbjct 288249 ATGAT-CCCTACCTTATTAACTGCAACTTC-TGTATTTATTATCGCCTTCATCGCAGCCC 288306 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || || || || | ||| | | |||||||||| Sbjct 288307 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACA 288366 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || ||||||||||| |||| ||| ||||| || ||||| ||||||| ||||| | Sbjct 288367 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 288426 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| ||| | | || || ||| | ||||| || || |||| | || ||| Sbjct 288427 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 288486 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||| |||||||||||||||||||| || || Sbjct 288487 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 288546 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||||||||||||| || ||||| || |||||||| || | || | || Sbjct 288547 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 288606 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || | |||||| | |||||||| ||||||||||| |||||| | || | Sbjct 288607 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 288666 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 | ||||| || ||||||| ||| | || ||||||| |||||||||||||| ||||| | Sbjct 288667 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATC 288726 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | || | ||| | || ||||| ||||||||||||| || |||||||| ||||| | Sbjct 288727 CATTTCGCATGTTAGGTGTAGC-----TGTTTGGCGGTTCCCTATTCAGTGCTATGCATG 288781 Query 164526 GTTC 164529 |||| Sbjct 288782 GTTC 288785 >seq4136 Length=310402 Score = 176 bits (194), Expect = 5e-39 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 164594 TTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTG 164653 |||||||| || ||||| || || || || || |||||||| ||||||||||| || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 164654 ATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGG 164713 || |||||||| ||| || |||||||| ||||| | ||||||||| | || || ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 164714 CCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAAC 164773 ||||| || || || ||||| |||||| | || |||| || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 164774 GGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCA 164833 || ||||| |||||||| || | | ||| | || ||||| || | || || ||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 164834 GA 164835 || Sbjct 3033 GA 3032 >seq203 Length=971741 Score = 165 bits (182), Expect = 9e-36 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 164716 TGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGG 164775 ||| || || || ||||| |||||| | || |||| || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 164776 TTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGA 164835 ||||| |||||||| || | | ||| | || ||||| || | || || ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 164836 CGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTT 164895 | ||||||||||| ||| || |||||||| |||||||| ||||||||||||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 164896 CCCTCTCGACCTTGCTGCT 164914 |||||| ||||| |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq2035 Length=9416 Score = 102 bits (112), Expect = 9e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 165896 CAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAG 165955 |||||| |||||| | | ||||||||||| ||||| || |||| || | |||| || Sbjct 3838 CAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 3779 Query 165956 TTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGA 166015 | ||||||| | | || || || || || || ||||| ||||| ||||| || |||| Sbjct 3778 TGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGA 3719 Query 166016 GATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACAT 166066 || | || || || ||||| || ||||| || ||||| || ||||| || Sbjct 3718 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATAT 3668 >seq238 Length=82349 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/134 (77%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 165201 GGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACT 165260 || |||||||| || | || ||||| ||||||| | ||| | || |||||| |||| Sbjct 49492 GGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACA 49433 Query 165261 GGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGG 165319 ||||||||||| || || ||||||||| || ||| | |||||||||||| | | ||| Sbjct 49432 GGGACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 49373 Query 165320 TGCAAACTTTCTTA 165333 ||||| ||||||| Sbjct 49372 TGCAA--TTTCTTA 49361 >seq4131 Length=315116 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/187 (71%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 164133 CTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAAT 164192 ||||| || || || ||||||| |||| || |||||||| ||| | | || || | Sbjct 226340 CTTCTGCGGCGATTGGATTGCACTTTTACCTAATTTGGGAAGCTGCATATGTTGATGAGT 226399 Query 164193 GGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATG 164252 || | ||||| | || |||| | || |||| | |||||| | | | || || Sbjct 226400 GGTTATACAATAGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTAG----CT-TG 226454 Query 164253 CTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCG 164312 || |||||||||||||||||||| || | |||| |||||||||||||||||| | Sbjct 226455 -TTGTATGGGTCGTGAGTGGGAACTGAGTTTCAGTCTGGGTATGCGTCCTTGGATTGTTG 226513 Query 164313 TAGCATA 164319 | ||||| Sbjct 226514 TTGCATA 226520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557622878585040