Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq4204 603 1e-167 seq3130 419 3e-112 seq3676 327 1e-84 seq4136 178 2e-39 seq203 176 5e-39 seq2035 107 2e-18 >seq4204 Length=279751 Score = 603 bits (668), Expect = 1e-167 Identities = 732/995 (74%), Gaps = 19/995 (2%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||||| |||| |||| | || ||||| || |||| ||||||||||| || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | |||| || ||||| || || |||| ||| || | || || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCC 216630 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 || || || || || || || ||||| || || || |||| | | ||||| ||||| Sbjct 216629 TCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAA 216570 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || || |||||||| || ||||| ||||| || || || | ||||| || || || Sbjct 216569 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 216510 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| || ||| | ||||||||| | |||||||| || |||| | || || | Sbjct 216509 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 216450 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | |||||| | | ||| | | || |||||||||||||||||||| || ||| Sbjct 216449 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 216390 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 || ||||||||||| ||||| ||| ||||| | ||| | ||| Sbjct 216389 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTAC---------------TGC 216345 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||| ||| | |||||||| | |||||||| ||||||||| | |||||| | || || Sbjct 216344 TGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 216285 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 ||| || ||||||| ||| |||| ||||| ||||||||||||||||| ||||| || Sbjct 216284 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCC 216225 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 || |||||||| || || |||||||| || || ||||| || |||||||| ||||| || Sbjct 216224 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 216165 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATG 178255 ||| |||| || || | | | | || | |||||||| || || ||| | || | | Sbjct 216164 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 178256 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCG 178315 |||||| || |||||||| |||||||| || || || || || |||||||||||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 178316 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375 | || | ||||||||||| || || |||||||| ||||| | ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 178376 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 178435 | || |||||||| || || || |||||||||||| | ||| |||| || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 178436 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACA 178495 |||| ||||| ||||| |||||||| || | | ||||| || || || | || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 178496 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATG 178555 | ||||| || | ||||||||||| ||||||||||||||| |||||||| ||||||| Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 178556 CTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 |||||||||||||||| ||||| |||||| |||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAA 215771 >seq3130 Length=1765 Score = 419 bits (464), Expect = 3e-112 Identities = 522/709 (74%), Gaps = 6/709 (1%) Strand=Plus/Minus Query 177603 TAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGAT 177662 |||| || |||| |||| | || ||||| || |||| ||||||||||| ||||||| Sbjct 1358 TAACCGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT 1299 Query 177663 CCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTG 177721 |||||| | | |||| || ||||| || || |||| ||| |||| || ||||| | Sbjct 1298 CCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAG 1240 Query 177722 TGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCA 177781 | || || || || || ||||| || || ||||||| | | ||||| ||||| || | Sbjct 1239 TAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTA 1180 Query 177782 TTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGG 177841 | |||||||| || ||||| ||||| || || || | ||||| || || || |||| Sbjct 1179 TCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGG 1120 Query 177842 AAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCC 177901 |||| || ||| | ||||||||| | |||||||| || |||| | || || | | | Sbjct 1119 AAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTAC 1060 Query 177902 ACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAG 177961 ||||| | | ||| | | || |||||||||||||||||||| || ||| || | Sbjct 1059 ACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGG 1000 Query 177962 GTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTAT 178021 |||||||||| ||||| ||| ||||| || ||||| || || || || ||||||| | Sbjct 999 GTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTT 940 Query 178022 TCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTG 178081 || | |||||||| | |||||||| ||||||||| | |||||| | || || || Sbjct 939 TCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTG 880 Query 178082 GCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCC 178141 | || ||||||| ||| |||| ||||| ||||||||||||||||| ||||| || || | Sbjct 879 GTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTC 820 Query 178142 ACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTC 178201 ||||||| || || |||||||| || |||||||| || |||||||| || || ||||| Sbjct 819 ACATGTTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCT 760 Query 178202 TGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTAC 178260 |||| || | || | | | || | |||||||| || || ||| | || |||||||| Sbjct 759 TGGTAACCT-CTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTAC 701 Query 178261 AAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTT 178309 | || |||||||| |||||||| | || || || || |||||||||| Sbjct 700 AGATTTGGTCAAGAGGAAGAGACTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 327 bits (362), Expect = 1e-84 Identities = 436/603 (72%), Gaps = 7/603 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||||| ||| |||| | || ||||| || |||| |||| || ||| || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | |||| || ||||| || || |||| ||| |||| || || Sbjct 288249 ATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCC 288307 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || | ||| | | ||||| ||||| Sbjct 288308 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAA 288367 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || || |||||||| || ||||| ||||| || || || | ||||| || || || Sbjct 288368 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 288427 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| || ||| | ||||||||| | |||||||| || |||| | || || | Sbjct 288428 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 288487 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | |||||| | | ||| | | || |||||||||||||||||||| || ||| Sbjct 288488 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 288547 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 || ||||||||||| ||||| ||| ||||| || ||||| || || | || |||| Sbjct 288548 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 288607 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||| ||| | |||||||| | |||||||| ||||||||| | |||||| | || || Sbjct 288608 TGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 288667 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 ||| || ||||||| ||| |||| ||||| | ||||||||||||||| ||||| || Sbjct 288668 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCC 288727 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 || | |||||| || || |||| ||||| ||||| || |||||||| ||||| || Sbjct 288728 ATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATGG 288782 Query 178197 TTC 178199 ||| Sbjct 288783 TTC 288785 >seq4136 Length=310402 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 178264 TTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTG 178323 || |||||||| |||||||| || || || || || |||||||||||||| || || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 178324 ATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGG 178383 ||||||||||| || || |||||||| ||||| | ||||||||| | || || ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 178384 CCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAAC 178443 ||||| || || || |||||||||||| | ||| |||| || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 178444 GGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGG 178481 || ||||| |||||||| || | | ||||| || || Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGG 3056 >seq203 Length=971741 Score = 176 bits (194), Expect = 5e-39 Identities = 162/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 178386 TGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGG 178445 ||| || || || |||||||||||| | ||| |||| || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 178446 TTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGA 178505 ||||| |||||||| || | | ||||| || || || | || || ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 178506 CGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTT 178565 | ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 178566 CCCTCTTGACCTCGCTGCTGCTGAA 178590 |||||| ||||| |||||| |||| Sbjct 778002 CCCTCTAGACCTAGCTGCTCTTGAA 778026 >seq2035 Length=9416 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 179582 CAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTC 179641 |||||| |||||| || ||||||||||| | ||||| || |||| ||| | |||| Sbjct 3838 CAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 3779 Query 179642 TAGCATTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGA 179701 | ||||| | | || || || || ||||| | || |||||||||||||| | || Sbjct 3778 TGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGA 3719 Query 179702 GATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAA 179761 ||| | || || || |||||||| || ||||| ||||| ||||| || || | || || Sbjct 3718 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTTTTAAA 3659 Query 179762 TGAAGGT 179768 ||| ||| Sbjct 3658 TGAGGGT 3652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596273493735520