Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq4204 545 3e-150 seq3130 376 3e-99 seq3676 284 1e-71 seq4136 170 2e-37 seq203 161 1e-34 seq2035 98.7 1e-15 seq3946 84.2 3e-11 seq2337 84.2 3e-11 >seq4204 Length=279751 Score = 545 bits (604), Expect = 3e-150 Identities = 711/987 (72%), Gaps = 15/987 (2%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| |||||| |||| ||| || |||||||| || |||| |||||||| || || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| || || || |||||||||||| || || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCACAGCCCCT 216629 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 | || || || || || || || || || ||| || ||||| | | ||||| ||||| Sbjct 216628 CTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAAT 216569 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || ||||||||||| || | || |||| || ||||| | ||||| || || || Sbjct 216568 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATT 216509 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | | ||||| ||||| ||||| || || |||| | || |||| Sbjct 216508 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTT 216449 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | |||||| | | || | | ||| |||||||||||||||||| || | ||| Sbjct 216448 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGT 216389 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 ||||||||||| |||||||| |||||| || | ||| | | || Sbjct 216388 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTACTG---------------CT 216344 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 |||||| || | || || |||| ||||| |||||||| | ||||||| | || || Sbjct 216343 GTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 216284 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| ||| | || ||||| || |||||||||||||| ||||| || Sbjct 216283 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCA 216224 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || |||||| | ||||| || || || || || || || || || || || ||||| ||| Sbjct 216223 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 216164 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 | | || || || ||| | || | |||||||| || || || || || | ||| Sbjct 216163 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGT 216104 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 |||| || |||||||| |||||||| || || || || |||||||| |||||||| || Sbjct 216103 TACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGC 216044 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || | ||||||||||| ||| || |||||||| ||||| | ||||||||| | || Sbjct 216043 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 215984 Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191 || |||||||| || || || |||||||| ||| | ||| | || ||||| |||||| Sbjct 215983 GCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 215924 Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251 || ||||| ||||| |||||||| || | | ||| | || ||||| || | || || Sbjct 215923 CTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATACT 215864 Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311 ||||| || | ||||||||||| |||||| |||||||| |||||||| ||||||||| Sbjct 215863 TGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCT 215804 Query 170312 CACAACTTCCCTCTCGACCTCGCTGCT 170338 |||||||||||||| ||||| |||||| Sbjct 215803 CACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 376 bits (416), Expect = 3e-99 Identities = 508/707 (72%), Gaps = 2/707 (0%) Strand=Plus/Minus Query 169357 TAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTGATGAT 169416 |||| || |||| ||| || |||||||| || |||| |||||||| || ||||||| Sbjct 1358 TAACCGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT 1299 Query 169417 CCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGT 169476 ||| | | || | ||||| || || || ||||||||||||| || || || || Sbjct 1298 CCCTACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGT 1239 Query 169477 GGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCAT 169536 || || || || || || || || ||| |||||||| | | ||||| ||||| || || Sbjct 1238 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 1179 Query 169537 CTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGA 169596 ||||||||| || | || |||| || ||||| | ||||| || || || ||||| Sbjct 1178 CTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGA 1119 Query 169597 AGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCA 169656 ||| ||| | | ||||| ||||| ||||| || || |||| | || |||| | || Sbjct 1118 AGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACA 1059 Query 169657 CTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGG 169716 |||| | | || | | ||| |||||||||||||||||| || | |||||||| Sbjct 1058 CTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGG 999 Query 169717 TATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTT 169776 |||||| |||||||| |||||| || || ||||| ||||| || || | |||||||| Sbjct 998 TATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTT 939 Query 169777 CCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGG 169836 | || | || || |||| ||||| |||||||| | ||||||| | || || || || Sbjct 938 CTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGG 879 Query 169837 AACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCA 169896 || || |||| ||| | || ||||| || |||||||||||||| ||||| || || || Sbjct 878 TACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCA 819 Query 169897 CATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCT 169956 |||| | ||||| || || || || ||||| || || || || || || || ||| | | Sbjct 818 CATGTTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTT 759 Query 169957 CGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAA 170016 || || || ||| | || | |||||||| || || || || || ||||||||| Sbjct 758 GGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAG 699 Query 170017 GTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTT 170063 || |||||||| |||||||| | || || || |||||||| |||| Sbjct 698 ATTTGGTCAAGAGGAAGAGACTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 284 bits (314), Expect = 1e-71 Identities = 423/600 (71%), Gaps = 5/600 (1%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| |||||| ||| ||| || |||||||| || |||| |||| || || || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | | | ||||| || || || ||||||||||||| || || Sbjct 288249 ATGATCCCTACCTTATTAACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCT 288308 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || || || ||| | |||| | | ||||| ||||| Sbjct 288309 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAAT 288368 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || ||||||||||| || | || |||| || ||||| | ||||| || || || Sbjct 288369 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATT 288428 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | | ||||| ||||| ||||| || || |||| | || |||| Sbjct 288429 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTT 288488 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | |||||| | | || | | ||| |||||||||||||||||| || | ||| Sbjct 288489 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGT 288548 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 ||||||||||| |||||||| |||||| || || ||||| ||||| | || | ||| Sbjct 288549 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCT 288608 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 |||||| || | || || |||| ||||| |||||||| | ||||||| | || || Sbjct 288609 GTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 288668 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| ||| | || ||||| | |||||||||||||| ||||| || Sbjct 288669 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCA 288728 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || | |||| | ||||| || ||||||| || || || || || || ||||| ||| Sbjct 288729 TTTCGCATGTTAGGTGTAGC-----TGTTTGGCGGTTCCCTATTCAGTGCTATGCATGGT 288783 >seq4136 Length=310402 Score = 170 bits (188), Expect = 2e-37 Identities = 183/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 170018 TTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTG 170077 || |||||||| |||||||| || || || || |||||||| |||||||| || || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 170078 ATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGG 170137 ||||||||||| ||| || |||||||| ||||| | ||||||||| | || || ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 170138 CCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAAC 170197 ||||| || || || |||||||| ||| | ||| | || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 170198 GGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCA 170257 || ||||| |||||||| || | | ||| | || ||||| || | || || ||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 170258 GA 170259 || Sbjct 3033 GA 3032 >seq203 Length=971741 Score = 161 bits (178), Expect = 1e-34 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 170140 TGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGG 170199 ||| || || || |||||||| ||| | ||| | || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 170200 TTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGA 170259 ||||| |||||||| || | | ||| | || ||||| || | || || ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 170260 CGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTT 170319 | ||||||||||| |||||| |||||||| |||||||| ||||||||||||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 170320 CCCTCTCGACCTCGCTGCT 170338 |||||| ||||| |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq2035 Length=9416 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 171338 CAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAG 171397 |||||| |||||||| ||||||||||||| ||||| || |||| ||| | ||| | || Sbjct 3838 CAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 3779 Query 171398 TAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGA 171457 | | | || | | || || ||||| || || | || ||||| || || |||| Sbjct 3778 TGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGA 3719 Query 171458 GGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAA 171517 || | ||||| |||||||| || || ||||| ||||| ||||| || || | || || Sbjct 3718 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTTTTAAA 3659 Query 171518 TGAAGGT 171524 ||| ||| Sbjct 3658 TGAGGGT 3652 >seq3946 Length=1320529 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 |||||||| |||||||| |||||||| || | ||| || |||||||||||| || || Sbjct 718368 TACATCCTCGACGCGGCGGAGGAAGCCGGCATCGACCTCCCCTACTCGTGCCGCGCCGGG 718427 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 || || || | ||||| || || || || || |||| || || || || || Sbjct 718428 GCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGTGCCGTCGACCAGTCGGACCAGTCG 718487 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAACC 167627 ||||| ||||| || | | || || | | | |||||||| || |||| |||||| Sbjct 718488 TTCCTCGACGACACCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCCTACCCAACC 718547 Query 167628 AGCGACTGTGT 167638 |||||| || Sbjct 718548 GCCGACTGCGT 718558 >seq2337 Length=590179 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 |||||||| |||||||| |||||||| || | ||| || |||||||||||| || || Sbjct 562517 TACATCCTCGACGCGGCGGAGGAAGCCGGCATCGACCTCCCCTACTCGTGCCGCGCCGGT 562576 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 || || || | ||||| || || || || ||| | || || || || || || Sbjct 562577 GCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGCTGTTGACCAGTCGGACCAGTCG 562636 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAACC 167627 ||||| ||||| || | | || || | | | |||||||| || |||| |||||| Sbjct 562637 TTCCTCGACGACACCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCCTACCCAACC 562696 Query 167628 AGCGACTGTGT 167638 |||||| || Sbjct 562697 GCCGACTGCGT 562707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592164925985440