Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq730 105 1e-17 seq623 104 5e-17 seq917 102 2e-16 seq195 100 6e-16 seq1153 98.7 2e-15 seq863 98.7 2e-15 seq645 98.7 2e-15 seq565 96.9 7e-15 >seq730 Length=2594087 Score = 105 bits (116), Expect = 1e-17 Identities = 74/83 (89%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 165700 TAAAACG-CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 |||||| ||||||||||||||||||| |||||||||| || || |||| || ||||||| Sbjct 580537 TAAAACATCTTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 580478 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 580477 TGGGTTCGAGCCCCACGGTGGGC 580455 >seq623 Length=416336 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 ||||||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 293596 CTTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 293537 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 293536 AGCCCCACGGTGGGC 293522 >seq917 Length=1037216 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 568710 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 568651 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 568650 GCCCCACGGTGGGC 568637 >seq195 Length=503632 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 336197 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 336256 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 336257 CCCCACGGTGGGC 336269 >seq1153 Length=868220 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 627044 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 627103 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 627104 CCCACGGTGGGC 627115 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||| ||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 634650 TTGCCCGTCTAGTTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 634591 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 634590 GCCCCACGGTGGGC 634577 >seq863 Length=248373 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 206655 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 206714 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 206715 CCCACGGTGGGC 206726 >seq645 Length=1084939 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 657808 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 657867 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 657868 CCCACGGTGGGC 657879 >seq565 Length=416303 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||| ||||||| Sbjct 387713 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGAGTTCGAG 387772 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 387773 CCCCACGGTGGGC 387785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057793803091640