Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq59 176 5e-39 seq2201 120 4e-22 >seq59 Length=545433 Score = 176 bits (194), Expect = 5e-39 Identities = 397/590 (67%), Gaps = 19/590 (3%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 |||||| |||||||| ||||| ||||| |||||||| || ||||||||||| || || Sbjct 337960 CAAACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 337901 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249 | ||| ||||| || ||||| ||||| | ||| ||||| | | || || |||||| | Sbjct 337900 CAATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCG-CACAGAAACTTCCAGAGA 337842 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGT 24306 | || || ||||| || |||||||| | | || || | || | || | || Sbjct 337841 AAAATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGT 337782 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | ||||| |||||||| |||||||||||||||||||| || ||||| | | Sbjct 337781 CG---ATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGG 337725 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA----AAGA 24422 | | ||| ||| |||| || |||||| | |||| || || | |||| Sbjct 337724 CGTGAAATAGACGAGTTTTCTCTGCGGAATCTTTGA----TGTAACACTCCAGGAGAAGA 337669 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || ||||| || ||||||||||| ||||| || || |||||||||||||| | || Sbjct 337668 CTGTACATCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCT 337609 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 || | | ||| || ||| | ||||| | || | ||| ||| || || || || Sbjct 337608 TCTGAGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCG 337549 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTT 24600 || ||||| || || | || || | || |||| |||| ||||| ||| Sbjct 337548 GACGCCGCAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTA 337489 Query 24601 TATT-CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 | || ||||| | |||||| ||| | ||| || || || | ||||| || || ||| Sbjct 337488 TGTTCCCAATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCC 337429 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || || || || ||||| | ||| || || |||| | || ||||| || Sbjct 337428 TCGGCTTTCTTGTACATTTCCCATATCTCCGGATAATTGATCGGAAACAT 337379 Score = 132 bits (146), Expect = 6e-26 Identities = 390/592 (66%), Gaps = 23/592 (4%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 |||||| ||||| |||||||| || || |||||||| || ||||||||||| || || Sbjct 359145 CAAACAGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 359204 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249 ||||| ||||| || || || || || ||||| ||||| | | || || |||||| | Sbjct 359205 CAGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCG-CACAGAAGCTTCCAGAGA 359263 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA-CCGGCGCTGTCA 24308 | || || ||||| || ||||| || | || || || || || | ||| || Sbjct 359264 AAAATATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCAGCAAAAGACTCCGC-ACCA 359322 Query 24309 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 24368 | ||||| |||||||| ||||| || || || || || || ||||| | || Sbjct 359323 TCGATCCATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGGCG 359382 Query 24369 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC----AAAAGACT 24424 | |||||| |||| || | | ||||| ||||| || || | |||||| Sbjct 359383 TGGAAGAGACGAGTTTTCTCTGTGTTGTCTTT----GATGTAACACTCCAATAGAAGACT 359438 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 ||||| || ||||| ||||| || || || || |||||||| ||||| | ||||| Sbjct 359439 GTACATCTCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTC 359498 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 | | ||| || ||| | ||||| | || | ||| || || || ||||| Sbjct 359499 CGAGACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGA 359558 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTT 24601 || ||||| || || | || || | || || | |||| || | || || | Sbjct 359559 TGCCGCAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGT-TGTCGGTAAGGGTGT 359617 Query 24602 ATTCCAATCATTGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 |||| || ||| |||| | || | ||| || ||||| | |||||||| || | Sbjct 359618 GTTCC---CAGTGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACG 359674 Query 24658 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 | || || || |||||||| | ||| | || |||| | |||||||| || Sbjct 359675 CTTCAGCTTTCTTATACATCTCCCATAACTCTGGATACTTGATTGGAAACAT 359726 >seq2201 Length=583503 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 54178 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 54237 |||| |||||| || || | || | || |||| ||| | ||||| |||||||||| Sbjct 456667 TTTGCCTCCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGGAAC 456608 Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 54297 ||| ||||| || | ||||||||||| |||||| || ||| |||||||||||||| Sbjct 456607 AATGCCATTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATTATG 456548 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 | || | |||||| |||||||| ||| ||||| || || ||| | || || Sbjct 456547 CACAGAAACACCTATTCCCCCTGCAGATTTGCTGATTACAGCACACTCTTTAAGAGTGTC 456488 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 ||| || ||||| ||||| ||||| ||||| | || ||||| ||| Sbjct 456487 ATATATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 53692 AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 53751 |||| || | || ||||||||||||||||| ||||| ||| |||| | | | | Sbjct 457639 AAACGTGGT-AAGGCAATAGATGCCAGATTGCAAACTGCTGTTTCATCTGGACTAGTGAA 457581 Query 53752 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 53811 || |||||||| ||||| | ||| | ||||||| ||||| | |||||||||||| || Sbjct 457580 TTCAATTATCTCTGTGCATAAATTTGAAGACTTGATTGTTCCAAGATTTTGTTGATTGCT 457521 Query 53812 CTTTTTGTTACACGCATCCT 53831 ||| | || || | ||||| Sbjct 457520 TTTTCTATTGCAAGTATCCT 457501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593705064853440