Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1915 116 3e-21 >seq1915 Length=652484 Score = 116 bits (128), Expect = 3e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || ||||||||||||||||| ||||| ||| ||| | | Sbjct 300472 AATGCAAATTTTCGTAAAGACATTGACGGGCAAAACAATTACTTTGGAAGTAGAAACTTC 300413 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || || || || | ||| || ||| || ||||||||| | || ||| || Sbjct 300412 AGATACCGTTGCGAATATAAAGAGTAAGATTCAAGACAAAGAAGGTATCCCTCCAGACCA 300353 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATT---GGAAGATTCCAAAACTATGGCCGATTA 25210 ||||||||| |||||||| || |||||| | ||| |||| | | | | || ||||| Sbjct 300352 ACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATTGC---ATTCTTGCTGATTA 300296 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| ||||| || ||||| || || || |||| | ||| | ||||||| Sbjct 300295 CAACATTCAGAAAGAATCGACCCTCCATCTGGTACTCCGACTGAGAGGAGG 300245 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || ||||||||||| || ||||| ||| ||| | | Sbjct 299788 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATTACTTTGGAAGTAGAAACTTC 299729 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||||| || || | ||| |||||| || |||||||| | ||| || || Sbjct 299728 AGATACGGTTGCGAATGTAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 299669 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||| |||||||| || || ||| | || ||| | | | | | |||||||| Sbjct 299668 GCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACAA 299609 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||| || ||||| ||||| || |||| | || || ||||||| Sbjct 299608 TATTCAGAAAGAATCGACTCTCCATCTGGTACTTCGGTTGAGAGGAGG 299561 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || ||||||||||| || || || ||| |||| | | Sbjct 300244 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATGACATTAGAAGTGGAAACTTC 300185 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || || || || | ||| || ||| || ||||||||| | || ||| || Sbjct 300184 AGATACCGTTGCGAATATAAAGAGTAAGATTCTAGACAAAGAAGGTATCCCTCCAGACCA 300125 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||||| |||||||| || |||||| | || ||| | | | || |||||||| Sbjct 300124 ACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATCGCATTCTTGCTGATTACAA 300065 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || ||||| || || || |||| | ||||| ||||||| Sbjct 300064 CATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGG 300017 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || |||||||||||||| || ||||| ||| ||| | | Sbjct 300016 AATGCAAATTTTCGTAAAGACATTGACGGGCAAGACAATTACTTTAGAAGTAGAAACTTC 299957 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| | || || || | ||| |||||| || |||||||| | ||| || || Sbjct 299956 AGATATCGTTGCGAATATAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 299897 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||| |||||||| || || ||| | || ||| | | | | | |||||||| Sbjct 299896 GCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACAA 299837 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || ||||| || || || |||| | ||||| ||||||| Sbjct 299836 CATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGG 299789 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||||||| | || |||||||| | |||||| ||||| ||| || | || Sbjct 300699 ATGCAAATATTCGTAAAGACATTGACAGACAAAACAATTACTTTGGAAGTAAAAACTTCA 300640 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || || || || | ||| || ||| || |||||||| | || ||| ||| Sbjct 300639 GATACCGTTGCGAATGTAAAGAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGACCAA 300580 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATT---GGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||||| |||||||| || || ||| | ||| |||| | | | | || |||||| Sbjct 300579 CAAAGACTGATCTTTGCAGGTAAGCAACTTGAGGATGATTGC---ATTCTTGCTGATTAC 300523 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| || ||||| ||| | || |||| | ||||| ||||||| Sbjct 300522 AACATTCAGAAAGAATCGACTATCCATCTGGTACTCCGATTGAGAGGAGG 300473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410785645326392