Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq486 107 2e-18 seq1915 105 8e-18 seq1364 105 8e-18 seq841 93.3 5e-14 seq622 89.7 6e-13 seq2050 82.4 9e-11 >seq486 Length=444201 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||| | | ||| | ||| | ||| ||| |||||||| ||||| || ||| Sbjct 170492 CCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCC 170551 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || |||| |||||| || || ||||| | ||| |||||||| | ||| Sbjct 170552 AATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGG 170611 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 43135 | | || |||||| ||| |||| |||| | | | | | || || ||||| || Sbjct 170612 ATACCTTCTTTGTCC-TGAATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTAC 170670 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||| || |||||||| || ||||||||||||||||| Sbjct 170671 CTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| ||| || ||||| ||||| ||||||| ||| || | || || Sbjct 173415 ACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCTTCC 173474 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||||||||| || || || | ||||||||||| | || | | ||||| | | || Sbjct 173475 AACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTAT-CTTG 173533 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | ||||||| | | | | | | | ||||| ||| || || || | |||||||||||| Sbjct 173534 AATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTT 173593 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || |||||||| || || || ||||| Sbjct 173594 GCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||| | || | ||| | |||| |||||||| || |||||||| || Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCA 158920 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || ||||| | || || | |||||| ||||| || || | | ||||||||||| || Sbjct 158919 AGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGA 158860 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||| | ||| | || | || | | | | ||||| || ||||| Sbjct 158859 ATTCCCTCCTTGT-CTTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCAC 158801 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || |||||||| ||||| ||||| Sbjct 158800 CTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| |||||||| |||| ||| || | || |||| |||||| || || || Sbjct 173660 CTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCATCTTCTAACTGCTTGCCTGCAAA 173719 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | | ||||| | | ||| |||||| | | | | Sbjct 173720 GATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTAT-CTTGAATTTTTGCCTTAACAT 173778 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||| || || || | |||||| |||||||| || |||||||| | Sbjct 173779 TGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATTGTTTTGCCAGTGAGCGTCTTGA 173838 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 173839 CGAAAATCTGCAT 173851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| ||||| | ||| | || | ||| ||| || ||||| ||||| || || Sbjct 169351 TCCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGC 169410 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || | || || | ||||| ||||| || || | || |||||||| | || Sbjct 169411 CAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGG 169470 Query 43076 CAC-GCTCTCCTTGTCCATGATTTTTTG---TTTGAGCGTCGCCACCGTGTCGCTCGATT 43131 | ||| ||||| || ||| | |||| || | |||| | ||||| ||| | Sbjct 169471 GATAGCT-TCCTTATCT-TGAATCTTTGCCTTTACATTGTCG--ATGGTGTCAGACGACT 169526 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || | |||||||||||||| || |||||||| || || |||||||| Sbjct 169527 CAACTTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || |||||||| || |||||||| || || ||||| | || || Sbjct 159189 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCC 159130 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| || || || || | | ||||||||||| || | | ||||||||| | Sbjct 159129 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGG 159070 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || ||| | | | | ||||| || || || || | ||||| || ||| Sbjct 159069 ATCTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACCTCCAGTGTGATAGTCTTG 159010 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || |||||||| ||||| ||||| Sbjct 159009 CCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 >seq1915 Length=652484 Score = 105 bits (116), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| || || | |||| ||| | || || || |||||||||||||||| Sbjct 299560 TCCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGA 299619 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| | | || || || || |||||||| || || ||||||| |||||||| | || Sbjct 299620 AAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGG 299679 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || || |||| | ||| |||| | || | |||| ||||| || | ||| | Sbjct 299680 GATGCCTTCTTTGT-CTTGAATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTTCTA 299738 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | || || || |||||||| | ||||||||| || ||||||||| Sbjct 299739 CTTCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCATT 299788 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| || || | |||| ||| | || || || ||||| ||||||||||| Sbjct 300016 TCCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGC 300075 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| | || || || || || || ||||| || || ||||||| || ||||| | || Sbjct 300076 AAGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGG 300135 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||||| | || || || | |||| || || || | |||||| Sbjct 300136 GATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCAC 300195 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || || || |||||||| | ||||||||| || ||||||||| Sbjct 300196 TTCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCATT 300244 >seq1364 Length=85398 Score = 105 bits (116), Expect = 8e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | |||| ||| | || || ||||| || ||||| || || Sbjct 46550 CCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCG 46491 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || || ||||| || ||||| || || ||||||||||| | || Sbjct 46490 AGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGG 46431 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||| ||| |||| | | | |||||| || || || Sbjct 46430 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACC 46371 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 |||| || || ||||| ||||| || ||||| |||||||| ||||| ||| Sbjct 46370 TCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCTTT 46320 >seq841 Length=1035533 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | || ||| | |||| || | || |||||| |||||||| || ||||| Sbjct 649928 TCCTCCCCGTAGACGGAGAACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGC 649987 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || |||||||| || ||||| || | ||||||||||| | || Sbjct 649988 AAGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGG 650047 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || |||||| ||| | || | || | | | | ||| || ||||| | Sbjct 650048 GATTCCTTCTTTGTCC-TGAATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGA 650106 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 | |||| ||||| || || |||||||| || || |||||||| ||||| ||| Sbjct 650107 CCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATGTTT 650159 >seq622 Length=1102686 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||| |||||||| | || | || ||| ||||||||| |||| |||||||||||||||| Sbjct 839218 TATAAAAAATTTACGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGA 839159 Query 60113 ATACTCACCACTATACTAC 60131 ||||| ||||||||||||| Sbjct 839158 ATACTTACCACTATACTAC 839140 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||||| | || | || ||| ||||||||| |||| |||||||||||||||| || Sbjct 398633 AAAAATTTTAACGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAAT 398692 Query 60115 ACTCACCACTATACTAC 60131 ||| ||||||||||||| Sbjct 398693 ACTTACCACTATACTAC 398709 >seq2050 Length=626127 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| || || | || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 184229 AAAAATACTCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 184170 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 184169 TTACCACTATACTAC 184155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571801674879840