Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq486 132 3e-26 seq1364 96.9 2e-15 seq841 82.4 5e-11 >seq486 Length=444201 Score = 132 bits (146), Expect = 3e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| ||||| |||||||| || |||||| || ||||||||||||| || ||| Sbjct 170273 AGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGA 170332 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || ||||| |||||||||||||| || | ||||||||||| || | | ||| Sbjct 170333 CCATCTTCCAATTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCC 170392 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| |||||| ||||| || | | || | || | ||| || || || | ||| Sbjct 170393 TTGTCCTGTATCTTAGTCTTTACATTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTG 170452 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||||||||| || || || || || ||||| Sbjct 170453 ATGGTTTTGCCGGTGAGTGTCTTGACGAAAATTTGCAT 170490 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| ||||| |||||||| || |||||| || ||||||||||||| || ||| Sbjct 169817 AGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGA 169876 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || ||||| ||||||||||| || || | || |||||||| || | | ||| Sbjct 169877 CCATCTTCCAATTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCC 169936 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| |||||| ||||| | | | || | || | ||| || || || | ||| Sbjct 169937 TTGTCCTGTATCTTAGTCTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTG 169996 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| ||||| || || || || |||||||| Sbjct 169997 ATGGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 170034 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || |||| |||| ||| || || |||||||| || | || ||| | || Sbjct 158508 AGAACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGTGTACGACCATCC 158449 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || || || || | || ||||||||| || | | ||||||||| Sbjct 158448 TCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCT 158389 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | || | || | || || || || | |||||||| Sbjct 158388 TGGATCTTA-GCTTTCACATTATCAATTGTGTCCGAAGACTCCACCTCTAAAGTGATGGT 158330 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||||||||||||||||||||||||||||| Sbjct 158329 CTTACCGGTGAGAGTTTTCACAAAGATCTGCATC 158296 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||||| || |||||||| ||||||||||||| || ||| | || Sbjct 169367 AGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCCAAAGTACGACCATCT 169426 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 ||||| ||||| || || || || | || |||||||| | ||| ||| ||||| || Sbjct 169427 TCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATAGCT-TCCTTATC 169485 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 |||||| ||||| || | | || | || | ||| || || || | |||||||| Sbjct 169486 TTGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGACTCAACTTCTAAAGTGATGGT 169545 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||||||| || || || || || ||||| Sbjct 169546 TTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||||| || |||||||| |||||||| |||| || ||| | || Sbjct 173640 AGCACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCATCT 173699 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || |||||||||||||| || || | ||||||||||| || | | ||||| || Sbjct 173700 TCTAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCT 173759 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||| ||| | || | | || | || | ||| || || || | |||||| ||| Sbjct 173760 TGAATTTTTGCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATTGTT 173819 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| || || || || ||||||||| Sbjct 173820 TTGCCAGTGAGCGTCTTGACGAAAATCTGCATC 173852 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| |||||||| ||||||||||| | || || | || Sbjct 173412 AGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCT 173471 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| ||||| || || | ||||||||||| || | | ||||| || Sbjct 173472 TCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCT 173531 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||| ||| | || | | || | || | ||| || || || | |||||||||| Sbjct 173532 TGAATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTT 173591 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || || |||||||| Sbjct 173592 TTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || |||| || | |||| ||| || || |||||||| || Sbjct 159211 GAACCCACCACGAAGACGGAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATC 159152 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | || || | || ||||||||||| || || || || | || |||||||||| Sbjct 159151 TGCAAGGGTCCGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGG 159092 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATT 34337 || | | ||||||||| ||| || ||||| | || | || | || | || | Sbjct 159091 AGGGATTCCCTCCTTGTCTTGGATC-TTCGCTTTCACATTATCAATTGTGTCCGAAGACT 159033 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 | || |||| ||||| || ||||| || ||||| || || |||||||||||| ||| Sbjct 159032 CAACCTCCAGTGTGATAGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCATCCCTC 158976 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| ||||| || |||| || ||||| || ||||||||||||| || ||| Sbjct 170501 AGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCCAATGTACGA 170560 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTC 34290 | || || |||||||||||||| || || | || |||||||| | |||| | | || Sbjct 170561 CCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGG-ATACCTTC 170619 Query 34291 CTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCG 34349 ||||| || ||| | ||| | || | || | ||| | ||||| || || | | Sbjct 170620 TTTGTCCTGAAT-TTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTACCTCTAATG 170678 Query 34350 TGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | ||||| || || || || ||||| |||||||| |||||| Sbjct 170679 TTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCATC 170719 >seq1364 Length=85398 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || ||||||||||||| || || |||| |||| ||||| || ||||| Sbjct 46515 TTCTTTTTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAA 46456 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| || | || ||||| || |||||| ||| | || Sbjct 46455 GATAAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATCTTTGCCTTGACATT 46396 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| || | || || || || | || || ||||| || || || || ||||| Sbjct 46395 GTCGATCGTGTCCGAGGACTCAACCTCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCAC 46336 Query 34378 AAAGATCTGCATC 34390 ||||||||||||| Sbjct 46335 AAAGATCTGCATC 46323 >seq841 Length=1035533 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||||||| | ||| || ||||| || || ||||| | Sbjct 649928 TCCTCCCCGTAGACGGAGAACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGC 649987 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | |||||| || ||||| || | ||||||||||| || Sbjct 649988 AAGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGG 650047 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| ||||| ||| | | | |||| ||| | |||||||| Sbjct 650048 GATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGAC 650107 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || || |||||||||||||||||||| Sbjct 650108 CTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 650155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323063227383680