Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1915 95.1 1e-14 seq1364 95.1 1e-14 seq841 95.1 1e-14 seq486 95.1 1e-14 >seq1915 Length=652484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||||| | ||||| || || || || |||||||||||||| || Sbjct 300017 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300076 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||||| || || |||||||| || || || || | | |||||||| ||||| Sbjct 300077 AGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGG 300136 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||| || ||| | ||| ||| | || | ||||| Sbjct 300137 ATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCACT 300196 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||||||||||| ||||| || || |||||||| Sbjct 300197 TCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| || | ||||| || || || || |||||||||||||| || Sbjct 300245 CCTCCTCTCAGTCGGAGTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300304 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || ||| || || |||||||| || || || || | | |||||||| ||||| Sbjct 300305 AGAATGCAATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGG 300364 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||| || ||| | ||| ||| | || | || || Sbjct 300365 ATACCTTCTTTGTCTTGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCTACT 300424 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| || |||||||||| ||||| || || |||||||| Sbjct 300425 TCCAAAGTAATTGTTTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300471 >seq1364 Length=85398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || ||||| || || || |||||||||||| || ||| |||| ||| Sbjct 46532 ACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCCTCC 46473 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| || | ||||| ||||| || || | || ||||| ||| Sbjct 46472 AGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 46413 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | ||||| ||| ||||| | |||||||| || Sbjct 46412 ATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTAATCGTTTTC 46353 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || |||||||||||||| ||||| || Sbjct 46352 CCCGTAAGGGTCTTCACAAAGATCTGCATCTT 46321 >seq841 Length=1035533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || |||||||||||| || ||||| ||| || | || || Sbjct 649947 ACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGCAAGTGTACGTCCATCCTCA 650006 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||| ||||| || || | || || |||||| | Sbjct 650007 AGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 650066 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||| | || ||||| | ||| |||||||| Sbjct 650067 ATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTCTTC 650126 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || || ||||||||||| |||||||| Sbjct 650127 CCCGTTAGGGTTTTCACAAAGATCTGCATGTT 650158 >seq486 Length=444201 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||| ||| ||||||||||||||||| || |||| | || || Sbjct 173414 TACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCTTC 173473 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || || || ||||| ||||| ||||| || || | ||| ||||| || Sbjct 173474 CAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTG 173533 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||||| |||||| | | | |||| ||| ||||| | || || || || Sbjct 173534 AATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTT 173593 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || ||||| || || || ||||| Sbjct 173594 GCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 || |||||||| | || | |||| || || ||| ||||| || |||||||| || Sbjct 158979 CCTCCTCTCAAACG-AAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGC 158921 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || |||| || || || || || ||||||| ||| ||||||||||| Sbjct 158920 AAGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGG 158861 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| ||| || ||| || | | ||||| |||||| Sbjct 158860 AATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCAC 158801 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || ||||| || ||||||||||| || ||||| ||||| Sbjct 158800 CTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | | || | ||| || ||| ||| |||||||||||||||||| | Sbjct 169352 CCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCC 169411 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || |||| ||| ||||| || || ||||| || || ||||| || || Sbjct 169412 AAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGG 169471 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | | | ||||| || ||| ||| ||| || | | | |||| ||| || Sbjct 169472 ATAGCTTCCTTATCTTGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGACTCAACT 169531 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || ||||| || || ||||| || || |||||||| Sbjct 169532 TCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 || |||||||| | || | |||| || || ||| |||||||| || || || || Sbjct 158751 CCTCCTCTCAAACG-AAGAACAAGATGAAGTGTGGATTCCTTCTGGATATTATAATCAGC 158693 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || |||| || || ||||| || ||||||| ||| ||||| ||||| Sbjct 158692 AAGGGTACGACCATCCTCCAACTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCAGGAGG 158633 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| ||| || ||| || | | ||||| |||||| Sbjct 158632 GATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCAC 158573 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || ||||| || ||||||||||| || ||||| ||||| Sbjct 158572 CTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395064472226788