Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq486 100 2e-16 seq1253 82.4 6e-11 >seq486 Length=444201 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 || |||||||| | ||| || || || ||||||||||| ||||||||||||| || | Sbjct 169589 AGCCTAAGTACAAGGTGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGA 169648 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||||||| |||||||| ||| |||| | | ||| || || || | ||||||| Sbjct 169649 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCC 169708 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| |||| ||| || | | | |||||| ||| || | ||| Sbjct 169709 TTATCTTGGATTTTCGCCTTAACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTG 169768 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| ||||| | ||| || || ||||| ||||| Sbjct 169769 ATGGTTTTTCCGGTGAGTGTCTTGACGAAAATCTGCAT 169806 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || ||||| ||||||||||||||||||| || || |||| Sbjct 169367 AGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCCAAAGTACGACCATCT 169426 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || ||| |||| | | ||| || || || | |||||||||| Sbjct 169427 TCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATAGCTTCCTTATCT 169486 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | | ||| || | | | |||||| | ||| ||| | |||||| || Sbjct 169487 TGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGACTCAACTTCTAAAGTGATGGTT 169546 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | || || || ||||||||||| Sbjct 169547 TTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | ||| ||||| || | || ||||| || ||||| |||||||| ||||||||| Sbjct 170036 CCCCCTCTTAGCCTAAGCACAAGATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCC 170095 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| ||||| ||||| ||| |||| | | |||||| || || Sbjct 170096 AAAGTCCGGCCATCTTCTAATTGCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGG 170155 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||||| | ||| || | ||| |||||| | ||| Sbjct 170156 ATACCTTCCTTATCTTGAATTTTTGCCTTAACATTATCAATGGTGTCAGACGACTCAACC 170215 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| |||| || || | || || || ||||| ||||| Sbjct 170216 TCTAAAGTGATGGTTTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 170262 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| |||||| || || ||||| |||||||||||||| |||| || || |||| Sbjct 173412 AGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCT 173471 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| || || || ||| |||| | | || || || || | ||||||||||| Sbjct 173472 TCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCT 173531 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| | ||| || | | | |||||| | ||| || | |||||| || Sbjct 173532 TGAATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTT 173591 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | || || || ||||| ||||| Sbjct 173592 TTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 || ||||| || | ||| | || ||||||||||| |||||||||||||||| || | Sbjct 169817 AGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGA 169876 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||| ||||| ||| |||| | | ||| || || || | |||||| Sbjct 169877 CCATCTTCCAATTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCC 169936 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || || | ||| || | | | |||||| | ||| || | ||| Sbjct 169937 TTGTCCTGTATCTTAGTCTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTG 169996 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||||| || | || || || ||||| ||||| Sbjct 169997 ATGGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 170034 >seq1253 Length=111296 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 || || || || | |||||| || || ||||| ||||||||||| || |||| ||| Sbjct 79451 AGCCTTAGGACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCTGCCAGAGTTCGC 79392 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| || ||||| || ||| |||| ||||| |||||||| ||| | ||||| Sbjct 79391 CCATCTTCTAACTGTTTTCCAGCAAAGATCAGTCTCTGTTGATCAGGGGGTATCCCTTCT 79332 Query 18228 TTATC 18232 || || Sbjct 79331 TTGTC 79327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379333699387860