Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq59 194 2e-44 seq2201 111 2e-19 >seq59 Length=545433 Score = 194 bits (214), Expect = 2e-44 Identities = 579/883 (66%), Gaps = 29/883 (3%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| |||||||| || || ||||| ||||| ||||| ||||| || | ||| || || Sbjct 338248 TTTCTGGTATTCTCCGACCCGTTTCTCGAAGAAATTTGTTTTCCCCTGCAAAGAAATCAA 338189 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 ||||| ||||||| ||||| | ||| ||| | ||| | | |||| | | Sbjct 338188 CTCCATCCAATCAAAAGGATTCGACGCATCGTACAACTTTCCATACCCCAGAGCTCCGAG 338129 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA- 33468 || | ||| ||||||||||| || ||| |||||| ||| |||||||| | | Sbjct 338128 TAACCGATCCGCGACGAATTCGATGTATTGGCTCATCAGAACACCGTTCATTCCCACCAA 338069 Query 33469 -GTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTA 33525 | || |||||||| | ||| | |||||| || ||| || || | | || Sbjct 338068 AGCGCAA--GGAAGAGCATCGCAG--ACGAATTCTCTCTCGATGTCAACGGCGTCCGATA 338013 Query 33526 TAATAAATCTAACGGTT----TCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCA 33579 || | |||| | || || ||| | | | | | || |||| || Sbjct 338012 CGAT----CCCACGGATCTTCTCCTCGCTCAGCTTCGTGTTCAGAAGACCGTAAAG--CA 337959 Query 33580 AACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGA 33639 |||| |||||||| ||||| ||||| |||||||| || |||||||| || || || | Sbjct 337958 AACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCA 337899 Query 33640 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGA 33699 ||| ||||| || ||||| ||||| | ||| ||||| | | ||| ||| || || | Sbjct 337898 ATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAAA 337839 Query 33700 AGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT 33756 | || ||||| || ||||||||| | | ||||| | || | || | ||| Sbjct 337838 ATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGTCG- 337780 Query 33757 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| |||||||| |||||||||||||||||||| || || || | ||| | Sbjct 337779 --ATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGT 337722 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 ||| ||| |||| || |||||| | ||| || | | |||||| |||| Sbjct 337721 GAAATAGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTACA 337662 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | || ||||||||||| ||||| || ||||||||||||||||| | || || | | Sbjct 337661 TCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTGAGA 337602 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| || ||| | ||||| | || | ||| ||| || || ||||| || | Sbjct 337601 CCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGCCG 337542 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTATT-CC 34053 |||| || || | || || | || |||| |||| ||||| ||| | || || Sbjct 337541 CAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTCCC 337482 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 ||| | |||||| ||| | ||| || || || | ||||| || || ||||| || | Sbjct 337481 AATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGGCTT 337422 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 | || ||||| | ||| || || |||| | ||| || || || Sbjct 337421 TCTTGTACATTTCCCATATCTCCGGATAATTGATCGGAAACAT 337379 Score = 141 bits (156), Expect = 1e-28 Identities = 387/587 (66%), Gaps = 13/587 (2%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 |||||| ||||| |||||||| || || |||||||| || |||||||| || || || Sbjct 359145 CAAACAGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGT 359204 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||||| ||||| || || || || || ||||| ||||| | | ||| ||| || || Sbjct 359205 CAGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCGCACAGAAGCTTCCAGAGAA 359264 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTGTCAT 33756 || || ||||| || |||||| || | || ||||| || || | ||| ||| Sbjct 359265 AAATATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCAGCAAAAGACTCCGCAC-CAT 359323 Query 33757 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| |||||||| ||||| || || || || || || || || | ||| | Sbjct 359324 CGATCCATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGGCGT 359383 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 |||||| |||| || | | ||||| | ||| || | | |||||| |||| Sbjct 359384 GGAAGAGACGAGTTTTCTCTGTGTTGTCTTTGATGTAACACTCCAATAGAAGACTGTACA 359443 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | || ||||| ||||| || || || ||||||||||| ||||| | ||||| | | Sbjct 359444 TCTCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTCCGAGA 359503 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| || ||| | ||||| | || | ||| || || || || || || | Sbjct 359504 CCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGATGCCG 359563 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCC 34053 |||| || || | || || | || || | |||| || | || || | |||| Sbjct 359564 CAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGT-TGTCGGTAAGGGTGTGTTCC 359622 Query 34054 AATCATTGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 || ||| |||| | || | ||| || ||||| | |||||||| || || || Sbjct 359623 ---CAGTGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACGCTTCA 359679 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || || |||||||| | ||| | || |||| | |||||| || || Sbjct 359680 GCTTTCTTATACATCTCCCATAACTCTGGATACTTGATTGGAAACAT 359726 >seq2201 Length=583503 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 63416 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63475 |||| |||||| || || | || | || |||| ||| | ||||| |||||||||| Sbjct 456667 TTTGCCTCCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGGAAC 456608 Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACT 63535 ||| || ||||| | |||||||| || |||||| | ||| |||||||||||||| Sbjct 456607 AATGCCATTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATTATG 456548 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 | || | ||||||||||||||| ||| ||||| || || ||| | ||||| Sbjct 456547 CACAGAAACACCTATTCCCCCTGCAGATTTGCTGATTACAGCACACTCTTTAAGAGTGTC 456488 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||| || || || || || ||||| ||||| | || ||||| ||| Sbjct 456487 ATATATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800059579840