Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq59 129 5e-25 >seq59 Length=545433 Score = 129 bits (142), Expect = 5e-25 Identities = 388/592 (66%), Gaps = 9/592 (2%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| || |||||||| || | |||||||||||| ||| | ||| || || || || Sbjct 337959 AAACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTC 337900 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||||| || |||||||||| ||| ||||| ||| || ||||| || Sbjct 337899 AATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAA 337840 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC-TCCATATACCTTGTTGC-TAG 11804 ||||| || ||||| ||||| || || | || || | | | || | | | | Sbjct 337839 AATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGTCG 337780 Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864 |||||| | |||||||| || ||||||||||| || || || || | |||| Sbjct 337779 --ATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGT 337722 Query 11865 TAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 ||||| | | |||| ||| |||| | | || || | | | ||| |||| Sbjct 337721 GAAATAGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTACA 337662 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | || |||||||| || || ||||| || |||||||| ||||| ||||| ||||| Sbjct 337661 TCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTGAGA 337602 Query 11985 ACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 ||| || || ||| |||| | || | ||||||| || |||||||| | Sbjct 337601 CCTGGACCTCTTTCAT-GAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGCC 337543 Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA---TCC 12100 ||||| || || || | || | || || | |||| || || | || ||| Sbjct 337542 GCAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTCC 337483 Query 12101 CAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGAT 12160 |||| | ||||| || | |||||| || || | ||||| ||| ||| | | | Sbjct 337482 CAATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGGCT 337423 Query 12161 TGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACC 12212 | || ||||||| ||| || || |||| || || || || || ||||| Sbjct 337422 TTCTTGTACATTTCCCATATCTCCGGATAATTGATCGGAAACATGCAGAACC 337371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468511751584320